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  2. A Bacillus velezensis strain from the rhizosphere of Sporobolus airoides (Torr.) Torr., a grass in central-north México, was isolated during a biocontrol of phytopathogens scrutiny study. The 2A-2B strain exhibit...

    Authors: Inés Martínez-Raudales, Yumiko De La Cruz-Rodríguez, Alejandro Alvarado-Gutiérrez, Julio Vega-Arreguín, Ahuitz Fraire-Mayorga, Miguel Alvarado-Rodríguez, Victor Balderas-Hernández and Saúl Fraire-Velázquez
    Citation: Standards in Genomic Sciences 2017 12:73
    Content type: Extended genome report Published on:

  3. Butyrivibrio hungatei MB2003 was isolated from the plant-adherent fraction of rumen contents from a pasture-grazed New Zealand dairy cow, and was selected for genome sequencing in order t...

    Authors: Nikola Palevich, William J. Kelly, Sinead C. Leahy, Eric Altermann, Jasna Rakonjac and Graeme T. Attwood
    Citation: Standards in Genomic Sciences 2017 12:72
    Content type: Extended genome report Published on:

  4. Crude oil contamination of soils and waters is a worldwide problem, which has been actively addressed in recent years. Sequencing genomes of microorganisms involved in the degradation of hydrocarbons have allo...

    Authors: Laura T. Morales, Laura N. González-García, María C. Orozco, Silvia Restrepo and Martha J. Vives
    Citation: Standards in Genomic Sciences 2017 12:71
    Content type: Extended genome report Published on:

  5. Candida boidinii is an Ascomycota yeast with important biotechnological applications. In this paper we present the genome sequencing and annotation of eight strains of this species isolat...

    Authors: Salvatore Camiolo, Cinzia Porru, Antonio Benítez-Cabello, Francisco Rodríguez-Gómez, Beatríz Calero-Delgado, Andrea Porceddu, Marilena Budroni, Ilaria Mannazzu, Rufino Jiménez-Díaz and Francisco Noé Arroyo-López
    Citation: Standards in Genomic Sciences 2017 12:70
    Content type: Extended genome report Published on:

  8. Cyanobacterial mats are laminated microbial ecosystems which occur in highly diverse environments and which may provide a possible model for early life on Earth. Their ability to produce hydrogen also makes th...

    Authors: Patrik D’haeseleer, Jackson Z. Lee, Leslie Prufert-Bebout, Luke C. Burow, Angela M. Detweiler, Peter K. Weber, Ulas Karaoz, Eoin L. Brodie, Tijana Glavina del Rio, Susannah G. Tringe, Brad M. Bebout and Jennifer Pett-Ridge
    Citation: Standards in Genomic Sciences 2017 12:67
    Content type: Metagenome report Published on:

  10. The genus Marinobacterium belongs to the family Alteromonadaceae within the class Gammaproteobacteria and was reported in 1997. Currently the genus Marinobacterium contains 16 species. Marinobacterium rhizophilum

    Authors: Dong Han Choi, Gwang II Jang, Alla Lapidus, Alex Copeland, T. B. K. Reddy, Supratim Mukherjee, Marcel Huntemann, Neha Varghese, Natalia Ivanova, Manoj Pillay, Brian J. Tindall, Markus Göker, Tanja Woyke, Hans-Peter Klenk, Nikos C. Kyrpides and Byung Cheol Cho
    Citation: Standards in Genomic Sciences 2017 12:65
    Content type: Short genome report Published on:

  11. The Gram-negative beta-proteobacterium Zoogloea sp. LCSB751 (LMG 29444) was newly isolated from foaming activated sludge of a municipal wastewater treatment plant. Here, we describe its draft genome sequence and ...

    Authors: Emilie E. L. Muller, Shaman Narayanasamy, Myriam Zeimes, Cédric C. Laczny, Laura A. Lebrun, Malte Herold, Nathan D. Hicks, John D. Gillece, James M. Schupp, Paul Keim and Paul Wilmes
    Citation: Standards in Genomic Sciences 2017 12:64
    Content type: Extended genome report Published on:

  12. This article reports the full genome sequence of Paenibacillus yonginensis DCY84T (KCTC33428, JCM19885), which is a Gram-positive rod-shaped bacterium isolated from humus soil of Yongin Forest in Gyeonggi Provinc...

    Authors: Yeon-Ju Kim, Johan Sukweenadhi, Ji Woong Seok, Chang Ho Kang, Eul-Su Choi, Sathiyamoorthy Subramaniyam and Deok Chun Yang
    Citation: Standards in Genomic Sciences 2017 12:63
    Content type: Short genome report Published on:

  13. Thermotoga sp. strain RQ7 is a member of the family Thermotogaceae in the order Thermotogales. It is a Gram negative, hyperthermophilic, and strictly anaerobic bacterium. It grows on dive...

    Authors: Zhaohui Xu, Rutika Puranik, Junxi Hu, Hui Xu and Dongmei Han
    Citation: Standards in Genomic Sciences 2017 12:62
    Content type: Extended genome report Published on:

  14. Escherichia coli is the most abundant facultative anaerobic bacteria in the gastro-intestinal tract of mammals but can be responsible for intestinal infection due to acquisition of virule...

    Authors: Audrey Segura, Pauline Auffret, Christophe Klopp, Yolande Bertin and Evelyne Forano
    Citation: Standards in Genomic Sciences 2017 12:61
    Content type: Extended genome report Published on:

  15. Paenibacillus ferrarius CY1T (= KCTC 33419T = CCTCC AB2013369T) is a Gram-positive, aerobic, endospore-forming, motile and rod-shaped bacterium isolated from iron mineral soil. This bacte...

    Authors: Jingxin Li, Wei Guo, Manman Shi, Yajing Cao and Gejiao Wang
    Citation: Standards in Genomic Sciences 2017 12:60
    Content type: Short genome report Published on:

  17. Ensifer meliloti Mlalz-1 (INSDC = ATZD00000000

    Authors: Wan Adnawani Meor Osman, Peter van Berkum, Milagros León-Barrios, Encarna Velázquez, Patrick Elia, Rui Tian, Julie Ardley, Margaret Gollagher, Rekha Seshadri, T. B. K. Reddy, Natalia Ivanova, Tanja Woyke, Amrita Pati, Victor Markowitz, Mohamed N. Baeshen, Naseebh Nabeeh Baeshen…
    Citation: Standards in Genomic Sciences 2017 12:58
    Content type: Extended genome report Published on:

  18. Dethiobacter alkaliphilus strain AHT1T is an anaerobic, sulfidogenic, moderately salt-tolerant alkaliphilic chemolithotroph isolated from hypersaline soda lake sediments in northeastern M...

    Authors: Emily Denise Melton, Dimitry Y. Sorokin, Lex Overmars, Alla L. Lapidus, Manoj Pillay, Natalia Ivanova, Tijana Glavina del Rio, Nikos C. Kyrpides, Tanja Woyke and Gerard Muyzer
    Citation: Standards in Genomic Sciences 2017 12:57
    Content type: Extended genome report Published on:

  19. Elizabethkingia meningoseptica is an emerging, healthcare-associated pathogen causing a high mortality rate in immunocompromised patients. We report the draft genome sequence of E. meningoseptica Em3, isolated fr...

    Authors: Shicheng Chen, Marty Soehnlen, Frances P. Downes and Edward D. Walker
    Citation: Standards in Genomic Sciences 2017 12:56
    Content type: Extended genome report Published on:

  20. Irpex lacteus, a cosmopolitan white-rot fungus, degrades lignin and lignin-derived aromatic compounds. In this study, we report the high-quality draft genome sequence of I. lacteus F17, i...

    Authors: Mengwei Yao, Wenman Li, Zihong Duan, Yinliang Zhang and Rong Jia
    Citation: Standards in Genomic Sciences 2017 12:55
    Content type: Short genome report Published on:

  21. A sulfur-oxidizing chemolithoautotrophic bacterium, Sulfurovum lithotrophicum 42BKTT, isolated from hydrothermal sediments in Okinawa, Japan, has been used industrially for CO2 bio-mitigation owing to its ability...

    Authors: Wooyoung Jeon, Lia Priscilla, Gyuyeon Park, Heeseok Lee, Narae Lee, Dongyup Lee, Hyuksung Kwon, Iksung Ahn, Changha Lee, Hongweon Lee and Jungoh Ahn
    Citation: Standards in Genomic Sciences 2017 12:54
    Content type: Short genome report Published on:

  22. Here we report the draft genome sequence of Chitinophaga costai A37T2T (=CIP 110584T, =LMG 27458T), which was isolated from the endophytic community of Pinus pinaster tree. The total genome size of C. costaii A37...

    Authors: Diogo N. Proença, William B. Whitman, Nicole Shapiro, Tanja Woyke, Nikos C. Kyrpides and Paula V. Morais
    Citation: Standards in Genomic Sciences 2017 12:53
    Content type: Short genome report Published on:

  23. Arthrobacter alpinus R3.8 is a psychrotolerant bacterial strain isolated from a soil sample obtained at Rothera Point, Adelaide Island, close to the Antarctic Peninsula. Strain R3.8 was s...

    Authors: Wah-Seng See-Too, Robson Ee, Yan-Lue Lim, Peter Convey, David A. Pearce, Taznim Begam Mohd Mohidin, Wai-Fong Yin and Kok Gan Chan
    Citation: Standards in Genomic Sciences 2017 12:52
    Content type: Short genome report Published on:

  24. Frankia sp. NRRL B-16219 was directly isolated from a soil sample obtained from the rhizosphere of Ceanothus jepsonii growing in the USA. Its host plant range includes members of Elaeagna...

    Authors: Amir Ktari, Imen Nouioui, Teal Furnholm, Erik Swanson, Faten Ghodhbane-Gtari, Louis S. Tisa and Maher Gtari
    Citation: Standards in Genomic Sciences 2017 12:51
    Content type: Extended genome report Published on:

  25. Bathymodiolus thermophilus, a mytilid mussel inhabiting the deep-sea hydrothermal vents of the East Pacific Rise, lives in symbiosis with chemosynthetic Gammaproteobacteria within its gil...

    Authors: Ruby Ponnudurai, Lizbeth Sayavedra, Manuel Kleiner, Stefan E. Heiden, Andrea Thürmer, Horst Felbeck, Rabea Schlüter, Stefan M. Sievert, Rolf Daniel, Thomas Schweder and Stephanie Markert
    Citation: Standards in Genomic Sciences 2017 12:50
    Content type: Extended genome report Published on:

  26. Herein, we report the draft-genome sequences and annotation of two opportunistic pathogenic strains of Staphylococcus cohnii isolated from humans. One strain (SC-57) was isolated from blood from a male patient in...

    Authors: Soraya Mendoza-Olazarán, José F. Garcia-Mazcorro, Rayo Morfín-Otero, Licet Villarreal-Treviño, Adrián Camacho-Ortiz, Eduardo Rodríguez-Noriega, Paola Bocanegra-Ibarias, Héctor J. Maldonado-Garza, Scot E. Dowd and Elvira Garza-González
    Citation: Standards in Genomic Sciences 2017 12:49
    Content type: Extended genome report Published on:

  28. Pyrodictium delaneyi strain Hulk is a newly sequenced strain isolated from chimney samples collected from the Hulk sulfide mound on the main Endeavour Segment of the Juan de Fuca Ridge (4...

    Authors: Lucas M. Demey, Caitlin R. Miller, Michael P Manzella, Rachel R. Spurbeck, Sukhinder K. Sandhu, Gemma Reguera and Kazem Kashefi
    Citation: Standards in Genomic Sciences 2017 12:47
    Content type: Extended genome report Published on:

  29. The genetic platforms of Deinococcus species remain the only systems in which massive ionizing radiation (IR)-induced genome damage can be investigated in vivo at exposures commensurate with cellular survival. We...

    Authors: Vera Y. Matrosova, Elena K. Gaidamakova, Kira S. Makarova, Olga Grichenko, Polina Klimenkova, Robert P. Volpe, Rok Tkavc, Gözen Ertem, Isabel H. Conze, Evelyne Brambilla, Marcel Huntemann, Alicia Clum, Manoj Pillay, Krishnaveni Palaniappan, Neha Varghese, Natalia Mikhailova…
    Citation: Standards in Genomic Sciences 2017 12:46
    Content type: Extended genome report Published on:

  30. Pedobacter steynii DX4 was isolated from the soil of Tibetan Plateau and it can use crude oil as sole carbon and energy source at 15 °C. The genome of Pedobacter steynii DX4 has been sequ...

    Authors: Sijing Chang, Gaosen Zhang, Ximing Chen, Haozhi Long, Yilin Wang, Tuo Chen and Guangxiu Liu
    Citation: Standards in Genomic Sciences 2017 12:45
    Content type: Extended genome report Published on:

  32. Fusibacter sp. 3D3 (ATCC BAA-2418) is an arsenate-reducing halotolerant strain within the Firmicutes phylum, isolated from the Salar de Ascotán, a hypersaline salt flat in Northern Chile....

    Authors: Antonio E. Serrano, Lorena V. Escudero, Cinthya Tebes-Cayo, Mauricio Acosta, Olga Encalada, Sebastián Fernández-Moroso and Cecilia Demergasso
    Citation: Standards in Genomic Sciences 2017 12:43
    Content type: Extended genome report Published on:

  33. Xanthomonas citri pv. malvacearum is a major pathogen of cotton, Gossypium hirsutum L.. In this study we report the complete genome of the X. citri pv. malvacearum strain MSCT1 assembled ...

    Authors: Kurt C. Showmaker, Mark A. Arick II, Chuan-Yu Hsu, Brigitte E. Martin, Xiaoqiang Wang, Jiayuan Jia, Martin J. Wubben, Robert L. Nichols, Tom W. Allen, Daniel G. Peterson and Shi-En Lu
    Citation: Standards in Genomic Sciences 2017 12:42
    Content type: Extended genome report Published on:

  34. We present the high quality, complete genome assembly of Neisseria lactamica Y92–1009 used to manufacture an outer membrane vesicle (OMV)-based vaccine, and a member of the Neisseria genus. The strain is availabl...

    Authors: Anish K. Pandey, David W. Cleary, Jay R. Laver, Martin C. J. Maiden, Xavier Didelot, Andrew Gorringe and Robert C. Read
    Citation: Standards in Genomic Sciences 2017 12:41
    Content type: Extended genome report Published on:

    The Correction to this article has been published in Standards in Genomic Sciences 2018 13:4

  36. Halomonads are moderately halophilic bacteria that are studied as models of prokaryotic osmoadaptation and sources of enzymes and chemicals for biotechnological applications. Despite the progress in understand...

    Authors: Björn E. Olsson, Ekaterina S. Korsakova, Lyudmila N. Anan’ina, Anna A. Pyankova, Olga V. Mavrodi, Elena G. Plotnikova and Dmitri V. Mavrodi
    Citation: Standards in Genomic Sciences 2017 12:39
    Content type: Extended genome report Published on:

  37. The genome of Leuconostoc suionicum DSM 20241T (=ATCC 9135T = LMG 8159T = NCIMB 6992T) was completely sequenced and its fermentative metabolic pathways were reconstructed to investigate the fermentative propertie...

    Authors: Byung Hee Chun, Se Hee Lee, Hye Hee Jeon, Dong-Woon Kim and Che Ok Jeon
    Citation: Standards in Genomic Sciences 2017 12:38
    Content type: Short genome report Published on:

  38. Filamentous fungus Aspergillus niger has high industrial value due to their lignocellulolytic enzyme activities and ATCC 10864 is one of the few type strains of A. niger which has a unique biofilm forming capabil...

    Authors: Sujay Paul, Yvette Ludeña, Gretty K. Villena, Fengan Yu, David H. Sherman and Marcel Gutiérrez-Correa
    Citation: Standards in Genomic Sciences 2017 12:37
    Content type: Short genome report Published on:

  39. Microbulbifer sp. CCB-MM1 is a halophile isolated from estuarine sediment of Matang Mangrove Forest, Malaysia. Based on 16S rRNA gene sequence analysis, strain CCB-MM1 is a potentially...

    Authors: Tsu Horng Moh, Nyok-Sean Lau, Go Furusawa and Al-Ashraf Abdullah Amirul
    Citation: Standards in Genomic Sciences 2017 12:36
    Content type: Genome report Published on:

  40. Planktothricoides is a free-living filamentous cyanobacterium belonging to the order Oscillatoriales and the family Phormidiaceae, capable of forming bloom in fresh and brackish waters. A...

    Authors: Shu Harn Te, Boon Fei Tan, Chek Yin Boo, Janelle Renee Thompson and Karina Yew-Hoong Gin
    Citation: Standards in Genomic Sciences 2017 12:35
    Content type: Extended genome report Published on:

  41. Desulfoplanes formicivorans strain Pf12BT is the type strain of the type species in the genus Desulfoplanes, which is the one of the genera in the family Desulfomicrobiaceae within the or...

    Authors: Miho Watanabe, Hisaya Kojima and Manabu Fukui
    Citation: Standards in Genomic Sciences 2017 12:34
    Content type: Short genome report Published on:

  42. Escherichia coli causing infection outside the gastrointestinal system are referred to as extra-intestinal pathogenic E. coli. Avian pathogenic E. coli is a subgroup of extra-intestinal p...

    Authors: Steffen L. Jørgensen, Egle Kudirkiene, Lili Li, Jens P. Christensen, John E. Olsen, Lisa Nolan and Rikke H. Olsen
    Citation: Standards in Genomic Sciences 2017 12:33
    Content type: Short genome report Published on:

  43. The genus Porphyrobacter belongs to aerobic anoxygenic phototrophic bacteria cluster. Porphyrobacter neustonensis DSM 9434 was isolated from a eutrophic freshwater pond in Australia, and is able to synthesize Bac...

    Authors: Qian Liu, Yue-Hong Wu, Hong Cheng, Lin Xu, Chun-Sheng Wang and Xue-Wei Xu
    Citation: Standards in Genomic Sciences 2017 12:32
    Content type: Short genome report Published on:

  44. Chryseobacterium bovis DSM 19482T (Hantsis-Zacharov et al., Int J Syst Evol Microbiol 58:1024-1028, 2008) is a Gram-negative, rod shaped, non-motile, facultative anaerobe, chemoorganotrop...

    Authors: Sivan Laviad-Shitrit, Markus Göker, Marcel Huntemann, Alicia Clum, Manoj Pillay, Krishnaveni Palaniappan, Neha Varghese, Natalia Mikhailova, Dimitrios Stamatis, T. B. K. Reddy, Chris Daum, Nicole Shapiro, Victor Markowitz, Natalia Ivanova, Tanja Woyke, Hans-Peter Klenk…
    Citation: Standards in Genomic Sciences 2017 12:31
    Content type: Short genome report Published on:

  45. A nonmotile, Gram-positive bacterium that shows an elongated and branching cell shape was isolated from soil samples from the botanical garden of Ulm University, Ulm, Germany. Here, the isolation procedure, id...

    Authors: Vanessa Jag, Anja Poehlein, Frank R. Bengelsdorf, Rolf Daniel and Peter Dürre
    Citation: Standards in Genomic Sciences 2017 12:30
    Content type: Short genome report Published on:

  46. Ralstonia solanacearum is an extremely destructive pathogen able to cause disease in a wide range of host plants. Here we report the draft genome sequences of the strains FJAT-91, FJAT-45...

    Authors: Yidan Sun, Keke Wang, Carlos Caceres-Moreno, Wei Jia, Aojun Chen, Heng Zhang, Renyi Liu and Alberto P. Macho
    Citation: Standards in Genomic Sciences 2017 12:29
    Content type: Extended genome report Published on:

  47. Strain Ola 51T (=LMG 24251T = CGMCC 1.7012T) is the type strain of the species Kosakonia oryzae and was isolated from surface-sterilized roots of the wild rice species Oryza latifolia grown in Guangdong, China. H...

    Authors: Yuanyuan Li, Shuying Li, Mingyue Chen, Guixiang Peng, Zhiyuan Tan and Qianli An
    Citation: Standards in Genomic Sciences 2017 12:28
    Content type: Short genome report Published on:

  48. The PacBio RS II provides for single molecule, real-time DNA technology to sequence genomes and detect DNA modifications. The starting point for high-quality sequence production is high molecular weight genomi...

    Authors: Nguyet Kong, Whitney Ng, Kao Thao, Regina Agulto, Allison Weis, Kristi Spittle Kim, Jonas Korlach, Luke Hickey, Lenore Kelly, Stephen Lappin and Bart C. Weimer
    Citation: Standards in Genomic Sciences 2017 12:27
    Content type: Standard operating procedure Published on:

  49. Bradyrhizobium elkanii USDA 76T (INSCD = ARAG00000000), the type strain for Bradyrhizobium elkanii, is an aerobic, motile, Gram-negative, non-spore-forming rod that was isolated from an e...

    Authors: Wayne Reeve, Peter van Berkum, Julie Ardley, Rui Tian, Margaret Gollagher, Dora Marinova, Patrick Elia, T. B. K. Reddy, Manoj Pillay, Neha Varghese, Rekha Seshadri, Natalia Ivanova, Tanja Woyke, Mohamed N. Baeshen, Nabih A. Baeshen and Nikos Kyrpides
    Citation: Standards in Genomic Sciences 2017 12:26
    Content type: Extended genome report Published on:

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  • ISSN: 2524-6372 (electronic)

Environmental Microbiome

ISSN: 2524-6372