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Correction to: Neisseria lactamica Y92–1009 complete genome sequence
Standards in Genomic Sciences volume 13, Article number: 4 (2018)
Correction
After publication of the original article [1] it was identified that an incorrect version of the manuscript has been published. This was caused by a technical error which led to a discrepancy between the editorially-accepted version of the manuscript, and the published version.
A list of Corrections is included below:
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1)
The following abbreviations have been corrected throughout the article:
Nla changed to N. lactamica
Nme changed to N. meningitides
N.go changed to N. gonorrhoeae
Nci changed to N. cinerea
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2)
Table 1: ‘Term’ and ‘Evidence code’ columns of the first 7 rows have been updated to the following:
| Domain Bacteria | TAS [37] |
| Phylum Proteobacteria | TAS [38] |
| Class Betaproteobacteria | TAS [39, 40] |
| Order Neisseriales | TAS [39, 41] |
| Family - Neisseriaceae | TAS [42] |
| Genus Neisseria | TAS [42] |
| Species Neisseria lactamica | TAS [42, 43] |
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3)
Table 2: Missing/blank term for MIGS 13 has been changed to read “Strain is not publicly available”.
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4)
2nd paragraph under heading “Insights from the genome sequence”: Sentence containing “…approximately a third (33.5%) of all open reading frames (ORFs) in this genome…” has been shortened to “approximately a third (33.5%) of all ORFs in this genome…”
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5)
3rd paragraph under heading “Insights from the genome sequence”: Bracketed abbreviation ‘(DUS)’ has been removed.
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6)
3rd paragraph under heading “Insights from the genome sequence”: Bracketed abbreviation ‘(CREEs)’ has been removed
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7)
Bracketed link for PHAST ‘(http://phast.wishartlad.com/index.html)’ changed to reference 35.
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8)
Reference 14 initially missing from article, has now been added and correctly referenced
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9)
Reference 33 was removed, as it was a duplicate of reference 30.
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10)
References 36–40 removed, and replaced with updated reference list (36–46):
36. Field D, Garrity G, Gray T, Morrison N, Selengut J, Sterk P, et al. The minimum information about a genome sequence (MIGS) specification. Nat Biotechnol. 2008;26:541–7.
37. Woese CR, Kandler O, Wheelis ML. Towards a natural system of organisms: proposal for the domains Archaea, Bacteria, and Eucarya. Proc Natl Acad Sci. 1990;87:4576–9. https://doi.org/10.1073/pnas.87.12.4576.
38. Garrity GM, Holt JG. The Road Map to the Manual. In: Bergey’s Manual® of Systematic Bacteriology. 2001. p. 119–66. https://doi.org/10.1007/978-0-387-21609-6_15.
39. Euzeby. J. List of new names and new combinations previously effectively, but not validly, published. Int J Syst Evol Microbiol. 2006;56:1–6.
40. Garrity GM, Bell JA, Lilburn T. Class II. Betaproteobacteria class. Nov. In: Bergey’s Manual® of Systematic Bacteriology. 2005. p. 575–922. https://doi.org/10.1007/0-387-29298-5_2.
41. Tønjum T. Neisseriales ord. Nov. In: Bergey’s Manual of Systematics of Archaea and Bacteria. John Wiley & Sons, Ltd.; 2015. https://doi.org/10.1002/9781118960608.obm00079.
42. SKERMAN VBD, McGOWAN V, SNEATH PHA. Approved Lists of Bacterial Names. Int J Syst Evol Microbiol. 1980;30:225–420.
43. Hollis DG, Wiggins GL, Weaver RE. Neisseria lactamicus sp. n., a lactose-fermenting species resembling Neisseria meningitidis. Appl Microbiol. 1969;17:71–7.
44. Aho EL, Keating a M, McGillivray SM. A comparative analysis of pilin genes from pathogenic and nonpathogenic Neisseria species. Microb Pathog. 2000;28:81–8.
45. Lennette, Edwin H. Manual of Clinical Microbiology. 4th edition. Washington DC: American Society for Microbiology; 1985.
46. Neisseria MLST website. https://pubmlst.org/neisseria/. Accessed 2 Feb 2017.
The Publisher apologises for this error.
Reference
- 1.
Pandey AK, Cleary DW, Laver JR, Maiden MCJ, Didelot X, Gorringe A, Read RC. Neisseria lactamica Y92–1009 complete genome sequence. Stand Genomic Sci. 2017;12:41. https://doi.org/10.1186/s40793-017-0250-6.
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The online version of the original article can be found under https://doi.org/10.1186/s40793-017-0288-5
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Pandey, A.K., Cleary, D.W., Laver, J.R. et al. Correction to: Neisseria lactamica Y92–1009 complete genome sequence. Stand in Genomic Sci 13, 4 (2018). https://doi.org/10.1186/s40793-017-0288-5
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