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  1. Croceicoccus marinus E4A9Twas isolated from deep-sea sediment collected from the East Pacific polymetallic nodule area. The strain is able to produce esterase, which is widely used in the...

    Authors: Yue-Hong Wu, Hong Cheng, Ying-Yi Huo, Lin Xu, Qian Liu, Chun-Sheng Wang and Xue-Wei Xu
    Citation: Standards in Genomic Sciences 2017 12:88
    Content type: Short genome report Published on:

  2. Bacteria of the genus Pectobacterium are economically important plant pathogens that cause soft rot disease on a wide variety of plant species. Here, we report the genome sequence of Pectobacterium carotovorum st...

    Authors: Outi Niemi, Pia Laine, Patrik Koskinen, Miia Pasanen, Ville Pennanen, Heidi Harjunpää, Johanna Nykyri, Liisa Holm, Lars Paulin, Petri Auvinen, E. Tapio Palva and Minna Pirhonen
    Citation: Standards in Genomic Sciences 2017 12:87
    Content type: Short genome report Published on:

  3. A bacterium belonging to the phylum Synergistetes, genus Dethiosulfovibrio was isolated in 2007 from a saline spring in Colombia. Dethiosulfovibrio salsuginis USBA 82T (DSM 21565 ...

    Authors: Carolina Díaz-Cárdenas, Gina López, José David Alzate-Ocampo, Laura N. González, Nicole Shapiro, Tanja Woyke, Nikos C. Kyrpides, Silvia Restrepo and Sandra Baena
    Citation: Standards in Genomic Sciences 2017 12:86
    Content type: Extended genome report Published on:

  4. Phage ST0 lysing Escherichia coli H8 was isolated from wastewater and sequenced using an Illumina HiSeq system. Genomic analyses revealed that it was virulent phages and contained a circular double-stranded DNA g...

    Authors: Honghui Liu, Xinchun Liu and Jinqing Li
    Citation: Standards in Genomic Sciences 2017 12:85
    Content type: Short genome report Published on:

    The Correction to this article has been published in Standards in Genomic Sciences 2018 13:15

  5. Acidithiobacillus thiooxidans CLST is an extremely acidophilic gamma-proteobacteria that was...

    Authors: Raquel Quatrini, Lorena V. Escudero, Ana Moya-Beltrán, Pedro A. Galleguillos, Francisco Issotta, Mauricio Acosta, Juan Pablo Cárdenas, Harold Nuñez, Karina Salinas, David S. Holmes and Cecilia Demergasso
    Citation: Standards in Genomic Sciences 2017 12:84
    Content type: Extended genome report Published on:

  6. Due to significant declines in the price of genome sequencing technology, the bioinformatics sciences are experiencing a massive upswing in data generation resulting in an increasing need for data distribution...

    Authors: Kathryn Petersen Mace, Daniel Jacobson, Brooklin Gore, Lauren Rotman, Jennifer Schopf, Mary Hester, Predrag Radulovic and William Barnett
    Citation: Standards in Genomic Sciences 2017 12:83
    Content type: Meeting report Published on:

  7. A lytic bacteriophage RG-2014 infecting a biofilm forming multidrug resistant bacterium Delftia tsuruhatensis strain ARB-1 as its host was isolated from a full-scale municipal wastewater treatment plant. Lytic ph...

    Authors: Ananda Shankar Bhattacharjee, Amir Mohaghegh Motlagh, Eddie B. Gilcrease, Md Imdadul Islam, Sherwood R. Casjens and Ramesh Goel
    Citation: Standards in Genomic Sciences 2017 12:82
    Content type: Short genome report Published on:

  9. Paraburkholderia caballeronis is a plant-associated bacterium. Stra...

    Authors: Fernando Uriel Rojas-Rojas, Erika Yanet Tapia-García, Maskit Maymon, Ethan Humm, Marcel Huntemann, Alicia Clum, Manoj Pillay, Krishnaveni Palaniappan, Neha Varghese, Natalia Mikhailova, Dimitrios Stamatis, T. B. K. Reddy, Victor Markowitz, Natalia Ivanova, Nikos Kyrpides, Tanja Woyke…
    Citation: Standards in Genomic Sciences 2017 12:80
    Content type: Short genome report Published on:

  10. Archaeoglobus fulgidus is the type species of genus Archaeoglobus Stetter 1998, a hyperthermophilic sulfate reducing group within the Archaeoglobi class of the euryarchaeota phylum. Membe...

    Authors: Nils-Kåre Birkeland, Peter Schönheit, Lianna Poghosyan, Anne Fiebig and Hans-Peter Klenk
    Citation: Standards in Genomic Sciences 2017 12:79
    Content type: Extended genome report Published on:

  11. Here we present the physiological features of Pseudomonas extremaustralis strain USBA-GBX-515 (CMPUJU 515), isolated from soils in Superparamo ecosystems, > 4000 m.a.s.l, in the northern Andes of South America, a...

    Authors: Gina López, Carolina Diaz-Cárdenas, Nicole Shapiro, Tanja Woyke, Nikos C. Kyrpides, J. David Alzate, Laura N. González, Silvia Restrepo and Sandra Baena
    Citation: Standards in Genomic Sciences 2017 12:78
    Content type: Extended genome report Published on:

  12. Acidithiobacillus albertensis is an extremely acidophilic, mesophilic, obligatory autotrophic sulfur-oxidizer, with potential importance in the bioleaching of sulfidic metal ores, first d...

    Authors: Matías Castro, Ana Moya-Beltrán, Paulo C. Covarrubias, Mónica Gonzalez, Juan Pablo Cardenas, Francisco Issotta, Harold Nuñez, Lillian G. Acuña, Gonzalo Encina, David S. Holmes, D. Barrie Johnson and Raquel Quatrini
    Citation: Standards in Genomic Sciences 2017 12:77
    Content type: Report Published on:

  14. Strain CCMM B554, also known as FSM-MA, is a soil dwelling and nodule forming, nitrogen-fixing bacterium isolated from the nodules of the legume Medicago arborea L. in the Maamora Forest, Morocco. The strain form...

    Authors: Marianna Nagymihály, Bálint M. Vásarhelyi, Quentin Barrière, Teik-Min Chong, Balázs Bálint, Péter Bihari, Kar-Wai Hong, Balázs Horváth, Jamal Ibijbijen, Mohammed Amar, Attila Farkas, Éva Kondorosi, Kok-Gan Chan, Véronique Gruber, Pascal Ratet, Peter Mergaert…
    Citation: Standards in Genomic Sciences 2017 12:75
    Content type: Extended genome report Published on:

  16. A Bacillus velezensis strain from the rhizosphere of Sporobolus airoides (Torr.) Torr., a grass in central-north México, was isolated during a biocontrol of phytopathogens scrutiny study. The 2A-2B strain exhibit...

    Authors: Inés Martínez-Raudales, Yumiko De La Cruz-Rodríguez, Alejandro Alvarado-Gutiérrez, Julio Vega-Arreguín, Ahuitz Fraire-Mayorga, Miguel Alvarado-Rodríguez, Victor Balderas-Hernández and Saúl Fraire-Velázquez
    Citation: Standards in Genomic Sciences 2017 12:73
    Content type: Extended genome report Published on:

  17. Butyrivibrio hungatei MB2003 was isolated from the plant-adherent fraction of rumen contents from a pasture-grazed New Zealand dairy cow, and was selected for genome sequencing in order t...

    Authors: Nikola Palevich, William J. Kelly, Sinead C. Leahy, Eric Altermann, Jasna Rakonjac and Graeme T. Attwood
    Citation: Standards in Genomic Sciences 2017 12:72
    Content type: Extended genome report Published on:

  18. Crude oil contamination of soils and waters is a worldwide problem, which has been actively addressed in recent years. Sequencing genomes of microorganisms involved in the degradation of hydrocarbons have allo...

    Authors: Laura T. Morales, Laura N. González-García, María C. Orozco, Silvia Restrepo and Martha J. Vives
    Citation: Standards in Genomic Sciences 2017 12:71
    Content type: Extended genome report Published on:

  19. Candida boidinii is an Ascomycota yeast with important biotechnological applications. In this paper we present the genome sequencing and annotation of eight strains of this species isolat...

    Authors: Salvatore Camiolo, Cinzia Porru, Antonio Benítez-Cabello, Francisco Rodríguez-Gómez, Beatríz Calero-Delgado, Andrea Porceddu, Marilena Budroni, Ilaria Mannazzu, Rufino Jiménez-Díaz and Francisco Noé Arroyo-López
    Citation: Standards in Genomic Sciences 2017 12:70
    Content type: Extended genome report Published on:

  22. Cyanobacterial mats are laminated microbial ecosystems which occur in highly diverse environments and which may provide a possible model for early life on Earth. Their ability to produce hydrogen also makes th...

    Authors: Patrik D’haeseleer, Jackson Z. Lee, Leslie Prufert-Bebout, Luke C. Burow, Angela M. Detweiler, Peter K. Weber, Ulas Karaoz, Eoin L. Brodie, Tijana Glavina del Rio, Susannah G. Tringe, Brad M. Bebout and Jennifer Pett-Ridge
    Citation: Standards in Genomic Sciences 2017 12:67
    Content type: Metagenome report Published on:

  24. The genus Marinobacterium belongs to the family Alteromonadaceae within the class Gammaproteobacteria and was reported in 1997. Currently the genus Marinobacterium contains 16 species. Marinobacterium rhizophilum

    Authors: Dong Han Choi, Gwang II Jang, Alla Lapidus, Alex Copeland, T. B. K. Reddy, Supratim Mukherjee, Marcel Huntemann, Neha Varghese, Natalia Ivanova, Manoj Pillay, Brian J. Tindall, Markus Göker, Tanja Woyke, Hans-Peter Klenk, Nikos C. Kyrpides and Byung Cheol Cho
    Citation: Standards in Genomic Sciences 2017 12:65
    Content type: Short genome report Published on:

  25. The Gram-negative beta-proteobacterium Zoogloea sp. LCSB751 (LMG 29444) was newly isolated from foaming activated sludge of a municipal wastewater treatment plant. Here, we describe its draft genome sequence and ...

    Authors: Emilie E. L. Muller, Shaman Narayanasamy, Myriam Zeimes, Cédric C. Laczny, Laura A. Lebrun, Malte Herold, Nathan D. Hicks, John D. Gillece, James M. Schupp, Paul Keim and Paul Wilmes
    Citation: Standards in Genomic Sciences 2017 12:64
    Content type: Extended genome report Published on:

  26. This article reports the full genome sequence of Paenibacillus yonginensis DCY84T (KCTC33428, JCM19885), which is a Gram-positive rod-shaped bacterium isolated from humus soil of Yongin Forest in Gyeonggi Provinc...

    Authors: Yeon-Ju Kim, Johan Sukweenadhi, Ji Woong Seok, Chang Ho Kang, Eul-Su Choi, Sathiyamoorthy Subramaniyam and Deok Chun Yang
    Citation: Standards in Genomic Sciences 2017 12:63
    Content type: Short genome report Published on:

  27. Thermotoga sp. strain RQ7 is a member of the family Thermotogaceae in the order Thermotogales. It is a Gram negative, hyperthermophilic, and strictly anaerobic bacterium. It grows on dive...

    Authors: Zhaohui Xu, Rutika Puranik, Junxi Hu, Hui Xu and Dongmei Han
    Citation: Standards in Genomic Sciences 2017 12:62
    Content type: Extended genome report Published on:

  28. Escherichia coli is the most abundant facultative anaerobic bacteria in the gastro-intestinal tract of mammals but can be responsible for intestinal infection due to acquisition of virule...

    Authors: Audrey Segura, Pauline Auffret, Christophe Klopp, Yolande Bertin and Evelyne Forano
    Citation: Standards in Genomic Sciences 2017 12:61
    Content type: Extended genome report Published on:

  29. Paenibacillus ferrarius CY1T (= KCTC 33419T = CCTCC AB2013369T) is a Gram-positive, aerobic, endospore-forming, motile and rod-shaped bacterium isolated from iron mineral soil. This bacte...

    Authors: Jingxin Li, Wei Guo, Manman Shi, Yajing Cao and Gejiao Wang
    Citation: Standards in Genomic Sciences 2017 12:60
    Content type: Short genome report Published on:

  31. Ensifer meliloti Mlalz-1 (INSDC = ATZD00000000

    Authors: Wan Adnawani Meor Osman, Peter van Berkum, Milagros León-Barrios, Encarna Velázquez, Patrick Elia, Rui Tian, Julie Ardley, Margaret Gollagher, Rekha Seshadri, T. B. K. Reddy, Natalia Ivanova, Tanja Woyke, Amrita Pati, Victor Markowitz, Mohamed N. Baeshen, Naseebh Nabeeh Baeshen…
    Citation: Standards in Genomic Sciences 2017 12:58
    Content type: Extended genome report Published on:

  32. Dethiobacter alkaliphilus strain AHT1T is an anaerobic, sulfidogenic, moderately salt-tolerant alkaliphilic chemolithotroph isolated from hypersaline soda lake sediments in northeastern M...

    Authors: Emily Denise Melton, Dimitry Y. Sorokin, Lex Overmars, Alla L. Lapidus, Manoj Pillay, Natalia Ivanova, Tijana Glavina del Rio, Nikos C. Kyrpides, Tanja Woyke and Gerard Muyzer
    Citation: Standards in Genomic Sciences 2017 12:57
    Content type: Extended genome report Published on:

  33. Elizabethkingia meningoseptica is an emerging, healthcare-associated pathogen causing a high mortality rate in immunocompromised patients. We report the draft genome sequence of E. meningoseptica Em3, isolated fr...

    Authors: Shicheng Chen, Marty Soehnlen, Frances P. Downes and Edward D. Walker
    Citation: Standards in Genomic Sciences 2017 12:56
    Content type: Extended genome report Published on:

  34. Irpex lacteus, a cosmopolitan white-rot fungus, degrades lignin and lignin-derived aromatic compounds. In this study, we report the high-quality draft genome sequence of I. lacteus F17, i...

    Authors: Mengwei Yao, Wenman Li, Zihong Duan, Yinliang Zhang and Rong Jia
    Citation: Standards in Genomic Sciences 2017 12:55
    Content type: Short genome report Published on:

  35. A sulfur-oxidizing chemolithoautotrophic bacterium, Sulfurovum lithotrophicum 42BKTT, isolated from hydrothermal sediments in Okinawa, Japan, has been used industrially for CO2 bio-mitigation owing to its ability...

    Authors: Wooyoung Jeon, Lia Priscilla, Gyuyeon Park, Heeseok Lee, Narae Lee, Dongyup Lee, Hyuksung Kwon, Iksung Ahn, Changha Lee, Hongweon Lee and Jungoh Ahn
    Citation: Standards in Genomic Sciences 2017 12:54
    Content type: Short genome report Published on:

  36. Here we report the draft genome sequence of Chitinophaga costai A37T2T (=CIP 110584T, =LMG 27458T), which was isolated from the endophytic community of Pinus pinaster tree. The total genome size of C. costaii A37...

    Authors: Diogo N. Proença, William B. Whitman, Nicole Shapiro, Tanja Woyke, Nikos C. Kyrpides and Paula V. Morais
    Citation: Standards in Genomic Sciences 2017 12:53
    Content type: Short genome report Published on:

  37. Arthrobacter alpinus R3.8 is a psychrotolerant bacterial strain isolated from a soil sample obtained at Rothera Point, Adelaide Island, close to the Antarctic Peninsula. Strain R3.8 was s...

    Authors: Wah-Seng See-Too, Robson Ee, Yan-Lue Lim, Peter Convey, David A. Pearce, Taznim Begam Mohd Mohidin, Wai-Fong Yin and Kok Gan Chan
    Citation: Standards in Genomic Sciences 2017 12:52
    Content type: Short genome report Published on:

  38. Frankia sp. NRRL B-16219 was directly isolated from a soil sample obtained from the rhizosphere of Ceanothus jepsonii growing in the USA. Its host plant range includes members of Elaeagna...

    Authors: Amir Ktari, Imen Nouioui, Teal Furnholm, Erik Swanson, Faten Ghodhbane-Gtari, Louis S. Tisa and Maher Gtari
    Citation: Standards in Genomic Sciences 2017 12:51
    Content type: Extended genome report Published on:

  39. Bathymodiolus thermophilus, a mytilid mussel inhabiting the deep-sea hydrothermal vents of the East Pacific Rise, lives in symbiosis with chemosynthetic Gammaproteobacteria within its gil...

    Authors: Ruby Ponnudurai, Lizbeth Sayavedra, Manuel Kleiner, Stefan E. Heiden, Andrea Thürmer, Horst Felbeck, Rabea Schlüter, Stefan M. Sievert, Rolf Daniel, Thomas Schweder and Stephanie Markert
    Citation: Standards in Genomic Sciences 2017 12:50
    Content type: Extended genome report Published on:

  40. Herein, we report the draft-genome sequences and annotation of two opportunistic pathogenic strains of Staphylococcus cohnii isolated from humans. One strain (SC-57) was isolated from blood from a male patient in...

    Authors: Soraya Mendoza-Olazarán, José F. Garcia-Mazcorro, Rayo Morfín-Otero, Licet Villarreal-Treviño, Adrián Camacho-Ortiz, Eduardo Rodríguez-Noriega, Paola Bocanegra-Ibarias, Héctor J. Maldonado-Garza, Scot E. Dowd and Elvira Garza-González
    Citation: Standards in Genomic Sciences 2017 12:49
    Content type: Extended genome report Published on:

  42. Pyrodictium delaneyi strain Hulk is a newly sequenced strain isolated from chimney samples collected from the Hulk sulfide mound on the main Endeavour Segment of the Juan de Fuca Ridge (4...

    Authors: Lucas M. Demey, Caitlin R. Miller, Michael P Manzella, Rachel R. Spurbeck, Sukhinder K. Sandhu, Gemma Reguera and Kazem Kashefi
    Citation: Standards in Genomic Sciences 2017 12:47
    Content type: Extended genome report Published on:

  43. The genetic platforms of Deinococcus species remain the only systems in which massive ionizing radiation (IR)-induced genome damage can be investigated in vivo at exposures commensurate with cellular survival. We...

    Authors: Vera Y. Matrosova, Elena K. Gaidamakova, Kira S. Makarova, Olga Grichenko, Polina Klimenkova, Robert P. Volpe, Rok Tkavc, Gözen Ertem, Isabel H. Conze, Evelyne Brambilla, Marcel Huntemann, Alicia Clum, Manoj Pillay, Krishnaveni Palaniappan, Neha Varghese, Natalia Mikhailova…
    Citation: Standards in Genomic Sciences 2017 12:46
    Content type: Extended genome report Published on:

  44. Pedobacter steynii DX4 was isolated from the soil of Tibetan Plateau and it can use crude oil as sole carbon and energy source at 15 °C. The genome of Pedobacter steynii DX4 has been sequ...

    Authors: Sijing Chang, Gaosen Zhang, Ximing Chen, Haozhi Long, Yilin Wang, Tuo Chen and Guangxiu Liu
    Citation: Standards in Genomic Sciences 2017 12:45
    Content type: Extended genome report Published on:

  46. Fusibacter sp. 3D3 (ATCC BAA-2418) is an arsenate-reducing halotolerant strain within the Firmicutes phylum, isolated from the Salar de Ascotán, a hypersaline salt flat in Northern Chile....

    Authors: Antonio E. Serrano, Lorena V. Escudero, Cinthya Tebes-Cayo, Mauricio Acosta, Olga Encalada, Sebastián Fernández-Moroso and Cecilia Demergasso
    Citation: Standards in Genomic Sciences 2017 12:43
    Content type: Extended genome report Published on:

  47. Xanthomonas citri pv. malvacearum is a major pathogen of cotton, Gossypium hirsutum L.. In this study we report the complete genome of the X. citri pv. malvacearum strain MSCT1 assembled ...

    Authors: Kurt C. Showmaker, Mark A. Arick II, Chuan-Yu Hsu, Brigitte E. Martin, Xiaoqiang Wang, Jiayuan Jia, Martin J. Wubben, Robert L. Nichols, Tom W. Allen, Daniel G. Peterson and Shi-En Lu
    Citation: Standards in Genomic Sciences 2017 12:42
    Content type: Extended genome report Published on:

  48. We present the high quality, complete genome assembly of Neisseria lactamica Y92–1009 used to manufacture an outer membrane vesicle (OMV)-based vaccine, and a member of the Neisseria genus. The strain is availabl...

    Authors: Anish K. Pandey, David W. Cleary, Jay R. Laver, Martin C. J. Maiden, Xavier Didelot, Andrew Gorringe and Robert C. Read
    Citation: Standards in Genomic Sciences 2017 12:41
    Content type: Extended genome report Published on:

    The Correction to this article has been published in Standards in Genomic Sciences 2018 13:4

  50. Halomonads are moderately halophilic bacteria that are studied as models of prokaryotic osmoadaptation and sources of enzymes and chemicals for biotechnological applications. Despite the progress in understand...

    Authors: Björn E. Olsson, Ekaterina S. Korsakova, Lyudmila N. Anan’ina, Anna A. Pyankova, Olga V. Mavrodi, Elena G. Plotnikova and Dmitri V. Mavrodi
    Citation: Standards in Genomic Sciences 2017 12:39
    Content type: Extended genome report Published on:

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  • ISSN: 2524-6372 (electronic)

Environmental Microbiome

ISSN: 2524-6372