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  1. Here we report three complete bacterial genome assemblies from a PacBio shotgun metagenome of a co-culture from Upper Klamath Lake, OR. Genome annotations and culture conditions indicate these bacteria are dep...

    Authors: Connor B. Driscoll, Timothy G. Otten, Nathan M. Brown and Theo W. Dreher
    Citation: Standards in Genomic Sciences 2017 12:9
  2. Rhizobium mesoamericanum STM6155 (INSCD = ATYY01000000) is an aerobic, motile, Gram-negative, non-spore-forming rod that can exist as a soil saprophyte or as an effective nitrogen fixing ...

    Authors: Agnieszka Klonowska, Aline López-López, Lionel Moulin, Julie Ardley, Margaret Gollagher, Dora Marinova, Rui Tian, Marcel Huntemann, T.B.K. Reddy, Neha Varghese, Tanja Woyke, Victor Markowitz, Natalia Ivanova, Rekha Seshadri, Mohamed N. Baeshen, Nabih A. Baeshen…
    Citation: Standards in Genomic Sciences 2017 12:7
  3. Pseudomonas brassicacearum strain L13-6-12 is a rhizosphere colonizer of potato, lettuce and sugar beet. Previous studies have shown that this motile, Gram-negative, non-sporulating bacte...

    Authors: Christin Zachow, Henry Müller, Jana Monk and Gabriele Berg
    Citation: Standards in Genomic Sciences 2017 12:6
  4. Lutibacter profundi LP1T within the family Flavobacteriaceae was isolated from a biofilm growing on the surface of a black smoker chimney at the Loki’s Castle vent field, located on the A...

    Authors: Juliane Wissuwa, Sven Le Moine Bauer, Ida Helene Steen and Runar Stokke
    Citation: Standards in Genomic Sciences 2017 12:5
  5. Nakamurella lactea DLS-10T , isolated from rock in Korea, is one of the four type strains of the genus Nakamurella. In this study, we describe the high quality dra...

    Authors: Imen Nouioui, Markus Göker, Lorena Carro, Maria del Carmen Montero-Calasanz, Manfred Rohde, Tanja Woyke, Nikos C. Kyrpides and Hans-Peter Klenk
    Citation: Standards in Genomic Sciences 2017 12:4
  6. Kosmotoga pacifica strain SLHLJ1T is a thermophilic chemoorganoheterotrophic bacterium isolated from a deep-sea hydrothermal sediment. It belongs to the physiologically homogeneous Thermo...

    Authors: Lijing Jiang, Stéphane L’Haridon, Mohamed Jebbar, Hongxiu Xu, Karine Alain and Zongze Shao
    Citation: Standards in Genomic Sciences 2017 12:3
  7. Agromyces aureus AR33T is a Gram-positive, rod-shaped and motile bacterium belonging to the Microbacteriaceae family in the phylum Actinobacteria that was isolated from a former zinc/lead...

    Authors: Erika Corretto, Livio Antonielli, Angela Sessitsch, Stéphane Compant, Christoph Höfer, Markus Puschenreiter and Günter Brader
    Citation: Standards in Genomic Sciences 2017 12:2
  8. Salmonella enterica serovar Enteritidis is one of the most common causes of Salmonellosis worldwide. Utilization of bacteriophages as prophylactic agents is a practical solution to preven...

    Authors: Javier Santander, Jose I. Vasquez, Cristopher Segovia, Leonardo Santos, Gabriel Turra, Karen Huber and James Robeson
    Citation: Standards in Genomic Sciences 2017 12:1
  9. Actinoalloteichus hymeniacidonis HPA 177T is a Gram-positive, strictly aerobic, black pigment producing and spore-forming actinomycete, which forms branching vegetative hyphae and was iso...

    Authors: Lena Schaffert, Andreas Albersmeier, Anika Winkler, Jörn Kalinowski, Sergey B. Zotchev and Christian Rückert
    Citation: Standards in Genomic Sciences 2016 11:91
  10. Oligoflexus tunisiensis Shr3T is the first strain described in the newest (eighth) class Oligoflexia of the phylum Proteobacteria. This strain was isolated from the 0.2-μm filtrate of a s...

    Authors: Ryosuke Nakai, Takatomo Fujisawa, Yasukazu Nakamura, Tomoya Baba, Miyuki Nishijima, Fatma Karray, Sami Sayadi, Hiroko Isoda, Takeshi Naganuma and Hironori Niki
    Citation: Standards in Genomic Sciences 2016 11:90
  11. The emergence of antibiotic-resistant foodborne bacteria is a global health problem that requires immediate attention. Bacteriophages are a promising biotechnological alternative approach against bacterial pat...

    Authors: Luis Amarillas, Cristobal Chaidez, Arturo González-Robles and Josefina León-Félix
    Citation: Standards in Genomic Sciences 2016 11:89
  12. Chlorinated solvent contamination of potable water supplies is a serious problem worldwide. Biostimulation protocols can successfully remediate chlorinated solvent contamination through enhanced reductive dech...

    Authors: Rebecca A. Reiss, Peter Guerra and Oleg Makhnin
    Citation: Standards in Genomic Sciences 2016 11:88
  13. Several species of the genus Dickeya provoke soft rot and blackleg diseases on a wide range of plants and crops. Dickeya solani has been identified as the causative agent of diseases outbreaks on potato culture i...

    Authors: Slimane Khayi, Pauline Blin, Teik Min Chong, Kok-Gan Chan and Denis Faure
    Citation: Standards in Genomic Sciences 2016 11:87
  14. Pseudomonas jessenii C2 and Pseudomonas jessenii H16 were isolated from low-Cu and high-Cu industrially contaminated soil, respectively. P. jessenii H16 displayed significant resistance t...

    Authors: Yanan Qin, Dan Wang, Kristian K. Brandt and Christopher Rensing
    Citation: Standards in Genomic Sciences 2016 11:86
  15. Streptomyces sp. TP-A0867 (=NBRC 109436) produces structurally complex polyketides designated alchivemycins A and B. Here, we report the draft genome sequence of this strain together with...

    Authors: Hisayuki Komaki, Natsuko Ichikawa, Akio Oguchi, Moriyuki Hamada, Enjuro Harunari, Shinya Kodani, Nobuyuki Fujita and Yasuhiro Igarashi
    Citation: Standards in Genomic Sciences 2016 11:85
  16. Here, we report the draft genome sequence of Micromonospora sp. DSW705 (=NBRC 110037), a producer of antitumor cyclic depsipeptides rakicidins A and B, together with the features of this strain and generation, an...

    Authors: Hisayuki Komaki, Natsuko Ichikawa, Akira Hosoyama, Moriyuki Hamada, Enjuro Harunari, Arisa Ishikawa and Yasuhiro Igarashi
    Citation: Standards in Genomic Sciences 2016 11:84
  17. Streptomyces sp. MWW064 (=NBRC 110611) produces an antitumor cyclic depsipeptide rakicidin D. Here, we report the draft genome sequence of this strain together with features of the organi...

    Authors: Hisayuki Komaki, Arisa Ishikawa, Natsuko Ichikawa, Akira Hosoyama, Moriyuki Hamada, Enjuro Harunari, Takuya Nihira, Watanalai Panbangred and Yasuhiro Igarashi
    Citation: Standards in Genomic Sciences 2016 11:83
  18. Prochlorothrix hollandica is filamentous non-heterocystous cyanobacterium which possesses the chlorophyll a/b light-harvesting complexes. Despite the growing interest in unusual green-pig...

    Authors: Natalia Velichko, Mikhail Rayko, Ekaterina Chernyaeva, Alla Lapidus and Alexander Pinevich
    Citation: Standards in Genomic Sciences 2016 11:82
  19. The marine alphaproteobacterium strain O3.65 was isolated from an enrichment culture of surface seawater contaminated with weathered oil (slicks) from the Deepwater Horizon (DWH) oil spill and belongs to the u...

    Authors: Helge-Ansgar Giebel, Franziska Klotz, Sonja Voget, Anja Poehlein, Katrin Grosser, Andreas Teske and Thorsten Brinkhoff
    Citation: Standards in Genomic Sciences 2016 11:81
  20. Methanoculleus bourgensis strain MAB1 has been identified as the hydrogenotrophic partner of mesophilic acetate-oxidising bacteria, a syntrophic relationship operating close to the thermo...

    Authors: Shahid Manzoor, Anna Schnürer, Erik Bongcam-Rudloff and Bettina Müller
    Citation: Standards in Genomic Sciences 2016 11:80
  21. The genus Escherichia includes pathogens and commensals. Bladder infections (cystitis) result most often from colonization of the bladder by uropathogenic E. coli strains. In contrast, a poorly defined condition ...

    Authors: Travis K. Price, Arya Mehrtash, Laurynas Kalesinskas, Kema Malki, Evann E. Hilt, Catherine Putonti and Alan J. Wolfe
    Citation: Standards in Genomic Sciences 2016 11:79
  22. Here we introduce a MIxS extension to facilitate the recording and cataloguing of metadata from samples related to hydrocarbon resources. The proposed MIxS-HCR package incorporates the core features of the MIx...

    Authors: Nicolas Tsesmetzis, Pelin Yilmaz, Peter C. Marks, Nikos C. Kyrpides, Ian M. Head and Bart P. Lomans
    Citation: Standards in Genomic Sciences 2016 11:78
  23. Authors: Rich Boden, Lee P. Hutt, Marcel Huntemann, Alicia Clum, Manoj Pillay, Krishnaveni Palaniappan, Neha Varghese, Natalia Mikhailova, Dimitrios Stamatis, Tatiparthi Reddy, Chew Yee Ngan, Chris Daum, Nicole Shapiro, Victor Markowitz, Natalia Ivanova, Tanja Woyke…
    Citation: Standards in Genomic Sciences 2016 11:77

    The original article was published in Standards in Genomic Sciences 2016 11:74

  24. A new plant commensal Pseudomonas veronii isolate (strain R4) was identified from a Xiphinema index biocontrol screen. Isolated from grapevine roots from vineyards in central Chile, the strain R4 exhibited a slow...

    Authors: Christian Montes, Fabiola Altimira, Hayron Canchignia, Álvaro Castro, Evelyn Sánchez, María Miccono, Eduardo Tapia, Álvaro Sequeida, Jorge Valdés, Paz Tapia, Carolina González and Humberto Prieto
    Citation: Standards in Genomic Sciences 2016 11:76
  25. Pseudomonas citronellolis is a Gram negative, motile gammaproteobacterium belonging to the order Pseudomonadales and the family Pseudomonadaceae. We isolated strain P3B5 from the phyllosp...

    Authors: Mitja N.P. Remus-Emsermann, Michael Schmid, Maria-Theresia Gekenidis, Cosima Pelludat, Jürg E. Frey, Christian H. Ahrens and David Drissner
    Citation: Standards in Genomic Sciences 2016 11:75
  26. Thermithiobacillus tepidarius DSM 3134T was originally isolated (1983) from the waters of a sulfidic spring entering the Roman Baths (Temple of Sulis-Minerva) at Bath, United Kingdom and ...

    Authors: Rich Boden, Lee P. Hutt, Marcel Huntemann, Alicia Clum, Manoj Pillay, Krishnaveni Palaniappan, Neha Varghese, Natalia Mikhailova, Dimitrios Stamatis, Tatiparthi Reddy, Chew Yee Ngan, Chris Daum, Nicole Shapiro, Victor Markowitz, Natalia Ivanova, Tanja Woyke…
    Citation: Standards in Genomic Sciences 2016 11:74

    The Erratum to this article has been published in Standards in Genomic Sciences 2016 11:77

  27. Bacillus amyloliquefaciens TF28 is a biocontrol endophytic bacterium that is capable of inhibition of a broad range of plant pathogenic fungi. The strain has the potential to be developed...

    Authors: Shumei Zhang, Wei Jiang, Jing Li, Liqiang Meng, Xu Cao, Jihua Hu, Yushuai Liu, Jingyu Chen and Changqing Sha
    Citation: Standards in Genomic Sciences 2016 11:73
  28. Candidatus Arsenophonus lipopteni (Enterobacteriaceae, Gammaproteobacteria) is an obligate intracellular symbiont of the blood feeding deer ked, Lipoptena cervi (Diptera: Hippoboscidae). ...

    Authors: Eva Nováková, Václav Hypša, Petr Nguyen, Filip Husník and Alistair C. Darby
    Citation: Standards in Genomic Sciences 2016 11:72
  29. Sulfurifustis variabilis and Sulfuricaulis limicola are autotrophic sulfur-oxidizing bacteria belonging to the family Acidiferrobacteraceae in the order Acidiferrobacterales. The type str...

    Authors: Kazuhiro Umezawa, Tomohiro Watanabe, Aya Miura, Hisaya Kojima and Manabu Fukui
    Citation: Standards in Genomic Sciences 2016 11:71
  30. Halorubrum lacusprofundi is an extreme halophile within the archaeal phylum Euryarchaeota. The type strain ACAM 34 was isolated from Deep Lake, Antarctica. H. lacusprofundi is of phylogen...

    Authors: Iain J. Anderson, Priya DasSarma, Susan Lucas, Alex Copeland, Alla Lapidus, Tijana Glavina Del Rio, Hope Tice, Eileen Dalin, David C. Bruce, Lynne Goodwin, Sam Pitluck, David Sims, Thomas S. Brettin, John C. Detter, Cliff S. Han, Frank Larimer…
    Citation: Standards in Genomic Sciences 2016 11:70
  31. The members of the genus Thermoactinomyces are known for their protein degradative capacities. Thermoactinomyces sp. strain AS95 is a Gram-positive filamentous bacterium, isolated from moderately saline water in ...

    Authors: Oliver K. I. Bezuidt, Mohamed A. Gomri, Rian Pierneef, Marc W. Van Goethem, Karima Kharroub, Don A. Cowan and Thulani P. Makhalanyane
    Citation: Standards in Genomic Sciences 2016 11:68
  32. Desulfurivibrio alkaliphilus strain AHT2T is a strictly anaerobic sulfidogenic haloalkaliphile isolated from a composite sediment sample of eight hypersaline alkaline lakes in the Wadi al...

    Authors: Emily Denise Melton, Dimitry Y. Sorokin, Lex Overmars, Olga Chertkov, Alicia Clum, Manoj Pillay, Natalia Ivanova, Nicole Shapiro, Nikos C. Kyrpides, Tanja Woyke, Alla L. Lapidus and Gerard Muyzer
    Citation: Standards in Genomic Sciences 2016 11:67
  33. Sedimenticola selenatireducens strain AK4OH1T (= DSM 17993T = ATCC BAA-1233T) is a microaerophilic bacterium isolated from sediment from the Arthur Kill intertidal strait between New Jers...

    Authors: Tiffany S. Louie, Donato Giovannelli, Nathan Yee, Priya Narasingarao, Valentin Starovoytov, Markus Göker, Hans-Peter Klenk, Elke Lang, Nikos C. Kyrpides, Tanja Woyke, Elisabetta Bini and Max M. Häggblom
    Citation: Standards in Genomic Sciences 2016 11:66
  34. Despite their ubiquity and their involvement in food spoilage, the genus Carnobacterium remains rather sparsely characterized at the genome level. Carnobacterium inhibens K1T is a member of the Carnobacteriaceae ...

    Authors: Wayne L. Nicholson, Christina L. Davis, Nicole Shapiro, Marcel Huntemann, Alicia Clum, T. B. K. Reddy, Manoj Pillay, Victor Markowitz, Neha Varghese, Amrita Pati, Natalia Ivanova, Nikos Kyrpides and Tanja Woyke
    Citation: Standards in Genomic Sciences 2016 11:65
  35. Lampropedia cohaerens strain CT6T, a non-motile, aerobic and coccoid strain was isolated from arsenic rich microbial mats (temperature ~45 °C) of a hot water spring located atop the Himal...

    Authors: Charu Tripathi, Nitish K. Mahato, Pooja Rani, Yogendra Singh, Komal Kamra and Rup Lal
    Citation: Standards in Genomic Sciences 2016 11:64
  36. Enterococcus faecium, traditionally considered a harmless gut commensal, is emerging as an important nosocomial pathogen showing increasing rates of multidrug resistance. We report the dr...

    Authors: Joran E. Michiels, Bram Van den Bergh, Maarten Fauvart and Jan Michiels
    Citation: Standards in Genomic Sciences 2016 11:63
  37. The marine Arctic isolate Halomonas sp. R5-57 was sequenced as part of a bioprospecting project which aims to discover novel enzymes and organisms from low-temperature environments, with potential uses in biotech...

    Authors: Adele Williamson, Concetta De Santi, Bjørn Altermark, Christian Karlsen and Erik Hjerde
    Citation: Standards in Genomic Sciences 2016 11:62
  38. The Serratia plymuthica strains 3Rp8 and 3Re4-18 are motile, Gram-negative, non-sporulating bacteria. Strain 3Rp8 was isolated from the rhizosphere of Brassica napus L. and strain 3Re4-18 from the endorhiza of So...

    Authors: Eveline Adam, Henry Müller, Armin Erlacher and Gabriele Berg
    Citation: Standards in Genomic Sciences 2016 11:61
  39. Bacillus amyloliquefaciens H57 is a bacterium isolated from lucerne for its ability to prevent feed spoilage. Further interest developed when ruminants fed with H57-inoculated hay showed ...

    Authors: Benjamin J. Schofield, Adam Skarshewski, Nancy Lachner, Diane Ouwerkerk, Athol V. Klieve, Peter Dart and Philip Hugenholtz
    Citation: Standards in Genomic Sciences 2016 11:60
  40. Methane emissions from agriculture represent around 9 % of global anthropogenic greenhouse emissions. The single largest source of this methane is animal enteric fermentation, predominantly from ruminant lives...

    Authors: Yang Li, Sinead C. Leahy, Jeyamalar Jeyanathan, Gemma Henderson, Faith Cox, Eric Altermann, William J. Kelly, Suzanne C. Lambie, Peter H. Janssen, Jasna Rakonjac and Graeme T. Attwood
    Citation: Standards in Genomic Sciences 2016 11:59
  41. A non-axenic unialgal culture containing a Subsection V (Stigonematales) cyanobacterium, Hapalosiphon strain MRB 220, was obtained from a benthic freshwater algal mat through multiple transfers following growth i...

    Authors: Boon Fei Tan, Shu Harn Te, Chek Yin Boo, Karina Yew-Hoong Gin and Janelle Renee Thompson
    Citation: Standards in Genomic Sciences 2016 11:58
  42. Acinetobacter baumannii is a pathogen that is becoming increasingly important and causes serious hospital-acquired infections. We sequenced the genome of A. baumannii NCTC 13423, a multid...

    Authors: Joran E. Michiels, Bram Van den Bergh, Maarten Fauvart and Jan Michiels
    Citation: Standards in Genomic Sciences 2016 11:57
  43. Mercury impacts the function and development of the central nervous system in both humans and wildlife by being a potent neurotoxin. Microbial bioremediation is an important means of remediation of mercury-con...

    Authors: Dony Chacko Mathew, Shou-Chen Lo, Gincy Marina Mathew, Kung-Hao Chang and Chieh-Chen Huang
    Citation: Standards in Genomic Sciences 2016 11:56
  44. Pseudomonas has the highest number of species out of any genus of Gram-negative bacteria and is phylogenetically divided into several groups. The Pseudomonas putida phylogenetic branch in...

    Authors: Arantxa Peña, Antonio Busquets, Margarita Gomila, Magdalena Mulet, Rosa M. Gomila, T. B. K. Reddy, Marcel Huntemann, Amrita Pati, Natalia Ivanova, Victor Markowitz, Elena García-Valdés, Markus Göker, Tanja Woyke, Hans-Peter Klenk, Nikos Kyrpides and Jorge Lalucat
    Citation: Standards in Genomic Sciences 2016 11:55
  45. Arthrobacter agilis strain L77, is a plant growth promoting and cold active hydrolytic enzymes producing psychrotrophic bacterium, isolated from Pangong Lake, a subglacial lake in north w...

    Authors: Ram N. Singh, Sonam Gaba, Ajar N. Yadav, Prakhar Gaur, Sneha Gulati, Rajeev Kaushik and Anil K. Saxena
    Citation: Standards in Genomic Sciences 2016 11:54
  46. The nonheterocystous filamentous cyanobacterium, strain ESFC-1, is a recently described member of the order Oscillatoriales within the Cyanobacteria. ESFC-1 has been shown to be a major diazotroph in the intertid...

    Authors: R. Craig Everroad, Rhona K. Stuart, Brad M. Bebout, Angela M. Detweiler, Jackson Z. Lee, Dagmar Woebken, Leslie Prufert-Bebout and Jennifer Pett-Ridge
    Citation: Standards in Genomic Sciences 2016 11:53
  47. Bacillus smithii is a facultatively anaerobic, thermophilic bacterium able to use a variety of sugars that can be derived from lignocellulosic feedstocks. Being genetically accessible, it...

    Authors: Elleke F. Bosma, Jasper J. Koehorst, Sacha A. F. T. van Hijum, Bernadet Renckens, Bastienne Vriesendorp, Antonius H. P. van de Weijer, Peter J. Schaap, Willem M. de Vos, John van der Oost and Richard van Kranenburg
    Citation: Standards in Genomic Sciences 2016 11:52
  48. Pseudomonas lutea OK2T (=LMG 21974T, CECT 5822T) is the type strain of the species and was isolated from the rhizosphere of grass growing in Spain in 2003 based on its phosphate-solubiliz...

    Authors: Yunyoung Kwak, Gun-Seok Park and Jae-Ho Shin
    Citation: Standards in Genomic Sciences 2016 11:51
  49. Methanobrevibacter millerae SM9 was isolated from the rumen of a sheep maintained on a fresh forage diet, and its genome has been sequenced to provide information on the phylogenetic dive...

    Authors: William J. Kelly, Diana M. Pacheco, Dong Li, Graeme T. Attwood, Eric Altermann and Sinead C. Leahy
    Citation: Standards in Genomic Sciences 2016 11:49