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  1. Strain FF4T was isolated from the skin flora of a 16-year-old healthy Senegalese female. This strain exhibited a 16S rRNA sequence similarity of 97.5 % with Bacillus fumarioli, the phylogenetically closest specie...

    Authors: Cheikh Ibrahima Lo, Roshan Padhmanabhan, Oleg Mediannikov, Jérôme Terras, Catherine Robert, Ngor Faye, Didier Raoult, Pierre-Edouard Fournier and Florence Fenollar
    Citation: Standards in Genomic Sciences 2015 10:41
  2. Clostridium sporogenes DSM 795 is the type strain of the species Clostridium sporogenes, first described by Metchnikoff in 1908. It is a Gram-positive, rod-shaped, anaerobic bacterium iso...

    Authors: Anja Poehlein, Karin Riegel, Sandra M König, Andreas Leimbach, Rolf Daniel and Peter Dürre
    Citation: Standards in Genomic Sciences 2015 10:40
  3. Methylibium sp. strain T29 was isolated from a gasoline-contaminated aquifer and proved to have excellent capabilities in degrading some common fuel oxygenates like methyl tert-butyl ethe...

    Authors: Zsolt Szabó, Péter Gyula, Hermina Robotka, Emese Bató, Bence Gálik, Péter Pach, Péter Pekker, Ildikó Papp and Zoltán Bihari
    Citation: Standards in Genomic Sciences 2015 10:39
  4. Paenirhodobacter enshiensis is a non-photosynthetic species that belongs to family Rhodobacteraceae. Here we report the draft genome sequence of Paenirhodobacter enshiensis DW2-9T and com...

    Authors: Dan Wang, Fengqiu Zhu, Xiaoli Zhu, Shixue Zheng, Rui Wang and Gejiao Wang
    Citation: Standards in Genomic Sciences 2015 10:38
  5. Here we report a summary classification and the features of five anaerobic oral bacteria from the family Peptostreptococcaceae. Bacterial strains were isolated from human subgingival plaque. Strains ACC19a, CM2, ...

    Authors: Maria V. Sizova, Amanda Chilaka, Ashlee M. Earl, Sebastian N. Doerfert, Paul A. Muller, Manolito Torralba, Jamison M. McCorrison, A. Scott Durkin, Karen E. Nelson and Slava S. Epstein
    Citation: Standards in Genomic Sciences 2015 10:37
  6. Rhizobium leguminosarum bv. viciae GB30 is an aerobic, motile, Gram-negative, non-spore-forming rod that can exist as a soil saprophyte or as a legume microsymbiont of Pisum sativum. GB30...

    Authors: Andrzej Mazur, Sofie E. De Meyer, Rui Tian, Jerzy Wielbo, Kamil Zebracki, Rekha Seshadri, TBK Reddy, Victor Markowitz, Natalia N. Ivanova, Amrita Pati, Tanja Woyke, Nikos C. Kyrpides and Wayne Reeve
    Citation: Standards in Genomic Sciences 2015 10:36
  7. Six strains of Enterococcus faecalis (S1, S12, S17, S18, S19 and S32) were isolated from copper fed pigs in Denmark. These Gram-positive bacteria within the genus Enterococcus are able to survive a variety of phy...

    Authors: Siyu Zhang, Dan Wang, Yihua Wang, Henrik Hasman, Frank M. Aarestrup, Hend A. Alwathnani, Yong-Guan Zhu and Christopher Rensing
    Citation: Standards in Genomic Sciences 2015 10:35
  8. Ensifer meliloti 4H41 is an aerobic, motile, Gram-negative, non-spore-forming rod that can exist as a soil saprophyte or as a legume microsymbiont of common bean (Phaseolus vulgaris). Strain 4H41...

    Authors: Ridha Mhamdi, Julie Ardley, Rui Tian, Rekha Seshadri, T.B.K. Reddy, Amrita Pati, Tanja Woyke, Victor Markowitz, Natalia Ivanova, Nikos Kyrpides and Wayne Reeve
    Citation: Standards in Genomic Sciences 2015 10:34
  9. Bradyrhizobium sp. Ai1a-2 is is an aerobic, motile, Gram-negative, non-spore-forming rod that was isolated from an effective nitrogen fixing root nodule of Andira inermis collected from Tres Pied...

    Authors: Rui Tian, Matthew Parker, Rekha Seshadri, TBK Reddy, Victor Markowitz, Natalia Ivanova, Amrita Pati, Tanja Woyke, Mohammed Baeshen, Nabih Baeshen, Nikos Kyrpides and Wayne Reeve
    Citation: Standards in Genomic Sciences 2015 10:33
  10. Burkholderia sp. strain UYPR1.413 is an aerobic, motile, Gram-negative, non-spore-forming rod that was isolated from a root nodule of Parapiptadenia rigida collected at the Angico plantation, Man...

    Authors: Sofie E. De Meyer, Elena Fabiano, Rui Tian, Peter Van Berkum, Rekha Seshadri, TBK Reddy, Victor Markowitz, Natalia Ivanova, Amrita Pati, Tanja Woyke, John Howieson, Nikos Kyrpides and Wayne Reeve
    Citation: Standards in Genomic Sciences 2015 10:31
  11. Salmonella arizonae (also called Salmonella subgroup IIIa) is a Gram-negative, non-spore-forming, motile, rod-shaped, facultatively anaerobic bacterium. S. arizonae strain RKS2983 was isolated fr...

    Authors: Chun-Xiao Wang, Song-Ling Zhu, Xiao-Yu Wang, Ye Feng, Bailiang Li, Yong-Guo Li, Randal N Johnston, Gui-Rong Liu, Jin Zhou and Shu-Lin Liu
    Citation: Standards in Genomic Sciences 2015 10:30
  12. Brachymonas chironomi strain AIMA4T (Halpern et al., 2009) is a Gram-negative, non-motile, aerobic, chemoorganotroph bacterium. B. chironomi is a member of the Comamonadaceae, a family within the...

    Authors: Sivan Laviad, Alla Lapidus, James Han, Matthew Haynes, TBK Reddy, Marcel Huntemann, Amrita Pati, Natalia N Ivanova, Konstantinos Mavromatis, Elke Lang, Manfred Rohde, Victor Markowitz, Tanja Woyke, Hans-Peter Klenk, Nikos C Kyrpides and Malka Halpern
    Citation: Standards in Genomic Sciences 2015 10:29
  13. To date, genome sequences (complete or in draft form) from only six baeocytous cyanobacteria in four genera have been reported: Xenococcus, Chroococcidiopsis, Pleurocapsa, and Stanieria. To expand our knowledge o...

    Authors: Chun-Hui Yu, Chung-Kuang Lu, Huang-Ming Su, Tzen-Yuh Chiang, Chi-Chuan Hwang, Tsunglin Liu and Yi-Min Chen
    Citation: Standards in Genomic Sciences 2015 10:28
  14. Bradyrhizobiumsp. Tv2a.2 is an aerobic, motile, Gram-negative, non-spore-forming rod that was isolated from an effective nitrogen-fixing root nodule of Tachigali versicolor collected in Barro Col...

    Authors: Rui Tian, Matthew Parker, Rekha Seshadri, TBK Reddy, Victor Markowitz, Natalia Ivanova, Amrita Pati, Tanja Woyke, Mohammed N Baeshen, Nabih A Baeshen, Nikos Kyrpides and Wayne Reeve
    Citation: Standards in Genomic Sciences 2015 10:27
  15. The Genomic Encyclopedia of Bacteria and Archaea (GEBA) project was launched by the JGI in 2007 as a pilot project to sequence about 250 bacterial and archaeal genomes of elevated phylogenetic diversity. Herein, ...

    Authors: William B Whitman, Tanja Woyke, Hans-Peter Klenk, Yuguang Zhou, Timothy G Lilburn, Brian J Beck, Paul De Vos, Peter Vandamme, Jonathan A Eisen, George Garrity, Philip Hugenholtz and Nikos C Kyrpides
    Citation: Standards in Genomic Sciences 2015 10:26
  16. This report describes the outcomes of a recent workshop, building on a series of workshops from the last three years with the goal if integrating genomics and biodiversity research, with a more specific goal h...

    Authors: John Deck, Robert Guralnick, Ramona Walls, Stanley Blum, Melissa Haendel, Andréa Matsunaga and John Wieczorek
    Citation: Standards in Genomic Sciences 2015 10:25
  17. Bradyrhizobium sp. Th.b2 is an aerobic, motile, Gram-negative, non-spore-forming rod that was isolated from an effective nitrogen-fixing root nodule of Amphicarpaea bracteata collected in Johnson...

    Authors: Rui Tian, Matthew Parker, Rekha Seshadri, TBK Reddy, Victor Markowitz, Natalia Ivanova, Amrita Pati, Tanja Woyke, Mohammed N Baeshen, Nabih A Baeshen, Nikos Kyrpides and Wayne Reeve
    Citation: Standards in Genomic Sciences 2015 10:24
  18. Klebsiella variicola strain DX120E (=CGMCC 1.14935) is an endophytic nitrogen-fixing bacterium isolated from sugarcane crops grown in Guangxi, China and promotes sugarcane growth. Here we summari...

    Authors: Li Lin, Chunyan Wei, Mingyue Chen, Hongcheng Wang, Yuanyuan Li, Yangrui Li, Litao Yang and Qianli An
    Citation: Standards in Genomic Sciences 2015 10:22
  19. Leucobacter chironomi strain MM2LBT (Halpern et al., Int J Syst Evol Microbiol 59:665-70 2009) is a Gram-positive, rod shaped, non-motile, aerobic, chemoorganotroph bacterium. L. chironom...

    Authors: Sivan Laviad, Alla Lapidus, Alex Copeland, TBK Reddy, Marcel Huntemann, Amrita Pati, Natalia N Ivanova, Victor M Markowitz, Rüdiger Pukall, Hans-Peter Klenk, Tanja Woyke, Nikos C Kyrpides and Malka Halpern
    Citation: Standards in Genomic Sciences 2015 10:21
  20. Contextual data collected concurrently with molecular samples are critical to the use of metagenomics in the fields of marine biodiversity, bioinformatics and biotechnology. We present here Marine Microbial Bi...

    Authors: Petra ten Hoopen, Stéphane Pesant, Renzo Kottmann, Anna Kopf, Mesude Bicak, Simon Claus, Klaas Deneudt, Catherine Borremans, Peter Thijsse, Stefanie Dekeyzer, Dick MA Schaap, Chris Bowler, Frank Oliver Glöckner and Guy Cochrane
    Citation: Standards in Genomic Sciences 2015 10:20
  21. Mesotoga strain PhosAc3 was the first mesophilic cultivated member of the order Thermotogales. This genus currently contain two described species, M. prima and M. infera. Strain PhosAc3, isolated from a Tunisian...

    Authors: Wajdi Ben Hania, Khaled Fadhlaoui, Céline Brochier-Armanet, Cécile Persillon, Anne Postec, Moktar Hamdi, Alain Dolla, Bernard Ollivier, Marie-Laure Fardeau, Jean Le Mer and Gaël Erauso
    Citation: Standards in Genomic Sciences 2015 10:12
  22. Cupriavidus sp. strain UYPR2.512 is an aerobic, motile, Gram-negative, non-spore-forming rod that was isolated from a root nodule of Parapiptadenia rigida grown in soils from a native forest of U...

    Authors: Sofie E De Meyer, Elena Fabiano, Rui Tian, Peter Van Berkum, Rekha Seshadri, TBK Reddy, Victor Markowitz, Natalia N Ivanova, Amrita Pati, Tanja Woyke, John Howieson, Nikos C Kyrpides and Wayne Reeve
    Citation: Standards in Genomic Sciences 2015 10:13
  23. With the rapid growth and development of sequencing technologies, genomes have become the new go-to for exploring solutions to some of the world’s biggest challenges such as searching for alternative energy so...

    Authors: Supratim Mukherjee, Marcel Huntemann, Natalia Ivanova, Nikos C Kyrpides and Amrita Pati
    Citation: Standards in Genomic Sciences 2015 10:18
  24. Bacteriovorax is the halophilic genus of the obligate bacterial predators, Bdellovibrio and like organisms. The predators are known for their unique biphasic life style in which they search for a...

    Authors: Huan Chen, Lauren M Brinkac, Pamela Mishra, Nan Li, Despoina S Lymperopoulou, Tamar L Dickerson, Nadine Gordon-Bradley, Henry N Williams and Jonathan H Badger
    Citation: Standards in Genomic Sciences 2015 10:11
  25. Roseovarius mucosus Biebl et al. 2005 is a bacteriochlorophyll a-producing representative of the marine Roseobacter group within the alphaproteobacterial family Rhodobacteraceae, which was isolat...

    Authors: Thomas Riedel, Stefan Spring, Anne Fiebig, Carmen Scheuner, Jörn Petersen, Markus Göker and Hans-Peter Klenk
    Citation: Standards in Genomic Sciences 2015 10:17
  26. Meganema perideroedes Gr1T is a filamentous bacterium isolated from an activated sludge wastewater treatment plant where it is implicated in poor sludge settleability (bulking). M. peride...

    Authors: Simon J McIlroy, Alla Lapidus, Trine R Thomsen, James Han, Matthew Haynes, Elizabeth Lobos, Marcel Huntemann, Amrita Pati, Natalia N Ivanova, Victor Markowitz, Susanne Verbarg, Tanja Woyke, Hans-Peter Klenk, Nikos Kyrpides and Per H Nielsen
    Citation: Standards in Genomic Sciences 2015 10:23
  27. Enterobacter mori strain 5–4 is a Gram-negative, motile, rod shaped, and facultatively anaerobic bacterium, which was isolated from a mixture of formation water (also known as oil-reservior water...

    Authors: Fan Zhang, Sanbao Su, Gaoming Yu, Beiwen Zheng, Fuchang Shu, Zhengliang Wang, Tingsheng Xiang, Hao Dong, Zhongzhi Zhang, DuJie Hou and Yuehui She
    Citation: Standards in Genomic Sciences 2015 10:9
  28. This genome report describes the draft genome and the physiological characteristics of Desulfitobacterium hafniense PCE-S, a Gram-positive bacterium known to dechlorinate tetrachloroethene (PCE) to dichloroethene...

    Authors: Tobias Goris, Bastian Hornung, Thomas Kruse, Anika Reinhold, Martin Westermann, Peter J Schaap, Hauke Smidt and Gabriele Diekert
    Citation: Standards in Genomic Sciences 2015 10:15
  29. The lactic acid bacterium Lactobacillus kunkeei has been described as an inhabitant of fructose-rich niches. Here we report on the genome sequence of L. kunkeei EFB6, which has been isolated from a honeybee larva...

    Authors: Marvin Djukic, Anja Poehlein, Juliane Strauß, Fabian Jannik Tann, Andreas Leimbach, Michael Hoppert and Rolf Daniel
    Citation: Standards in Genomic Sciences 2015 10:16
  30. Root nodule bacteria are free-living soil bacteria, belonging to diverse genera within the Alphaproteobacteria and Betaproteobacteria, that have the capacity to form nitrogen-fixing symbioses with legumes. The sy...

    Authors: Wayne Reeve, Julie Ardley, Rui Tian, Leila Eshragi, Je Won Yoon, Pinyaruk Ngamwisetkun, Rekha Seshadri, Natalia N Ivanova and Nikos C Kyrpides
    Citation: Standards in Genomic Sciences 2015 10:14
  31. Pontibacter roseus is a member of genus Pontibacter family Cytophagaceae, class Cytophagia. While the type species of the genus Pontibacter actiniarum was isolated in 2005 from a marine environme...

    Authors: Supratim Mukherjee, Alla Lapidus, Nicole Shapiro, Jan-Fang Cheng, James Han, TBK Reddy, Marcel Huntemann, Natalia Ivanova, Natalia Mikhailova, Amy Chen, Krishna Palaniappan, Stefan Spring, Markus Göker, Victor Markowitz, Tanja Woyke, Brian J Tindall…
    Citation: Standards in Genomic Sciences 2015 10:8
  32. During a study of the anaerobic microbial community of a lithifying hypersaline microbial mat of Lake 21 on the Kiritimati atoll (Kiribati Republic, Central Pacific) strain L21-RPul-D2T was isolated. The closest ...

    Authors: Wajdi Ben Hania, Manon Joseph, Peter Schumann, Boyke Bunk, Anne Fiebig, Cathrin Spröer, Hans-Peter Klenk, Marie-Laure Fardeau and Stefan Spring
    Citation: Standards in Genomic Sciences 2015 10:7
  33. Pseudomonas fluorescens strain PICF7 is a native endophyte of olive roots. Previous studies have shown this motile, Gram-negative, non-sporulating bacterium is an effective biocontrol agent again...

    Authors: Pedro Manuel Martínez-García, David Ruano-Rosa, Elisabetta Schilirò, Pilar Prieto, Cayo Ramos, Pablo Rodríguez-Palenzuela and Jesús Mercado-Blanco
    Citation: Standards in Genomic Sciences 2015 10:10
  34. The Roseophages, a group of marine viruses that uniquely infect the Roseobacter clade of bacteria, play a significant role in marine ecosystems. Here we present a complete genomic sequence of an N4 phage ‘vB_DshP...

    Authors: Jianda Ji, Rui Zhang and Nianzhi Jiao
    Citation: Standards in Genomic Sciences 2015 9:31
  35. Bacillus azotoformans MEV2011, isolated from soil, is a microaerotolerant obligate denitrifier, which can also produce N2 by co-denitrification. Oxygen is consumed but not growth-supportive. The ...

    Authors: Maja Nielsen, Lars Schreiber, Kai Finster and Andreas Schramm
    Citation: Standards in Genomic Sciences 2015 9:23
  36. The Roseophages, a group of marine viruses that uniquely infect the Roseobacter clade of bacteria, play a significant role in marine ecosystems. Here we present a complete genomic sequence of an N4 phage ‘vB_DshP...

    Authors: Jianda Ji, Rui Zhang and Nianzhi Jiao
    Citation: Standards in Genomic Sciences 2015 10:6

    The Erratum to this article has been published in Standards in Genomic Sciences 2015 10:69

  37. Corynebacterium callunae DSM 20147T is a member of the genus Corynebacterium which contains Gram-positive and non-spore forming bacteria with a high G + C content. C. callunae was isolated during...

    Authors: Marcus Persicke, Andreas Albersmeier, Hanna Bednarz, Karsten Niehaus, Jörn Kalinowski and Christian Rückert
    Citation: Standards in Genomic Sciences 2015 10:5
  38. Bacillus azotoformans MEV2011, isolated from soil, is a microaerotolerant obligate denitrifier, which can also produce N2 by co-denitrification. Oxygen is consumed but not growth-supportive. The ...

    Authors: Maja Nielsen, Lars Schreiber, Kai Finster and Andreas Schramm
    Citation: Standards in Genomic Sciences 2015 10:4

    The Erratum to this article has been published in Standards in Genomic Sciences 2015 10:72

  39. Flavobacterium psychrophilum is the causative agent of bacterial cold water disease and rainbow trout fry mortality syndrome in salmonid fishes and is associated with significant losses in the aq...

    Authors: Anson KK Wu, Andrew M Kropinski, John S Lumsden, Brian Dixon and Janet I MacInnes
    Citation: Standards in Genomic Sciences 2015 10:3
  40. Lysinibacillus sphaericus CBAM5, was isolated from subsurface soil of oil well explorations in the Easter Planes of Colombia. This strain has potential in bioremediation of heavy-metal polluted e...

    Authors: Tito David Peña-Montenegro, Lucía Lozano and Jenny Dussán
    Citation: Standards in Genomic Sciences 2015 10:2
  41. Species of the genus Halomonas are halophilic and their flexible adaption to changes of salinity and temperature brings considerable potential biotechnology applications, such as degradation of organic pollutants...

    Authors: Xiao-Yang Gao, Xiao-Yang Zhi, Hong-Wei Li, Yu Zhou, Alla Lapidus, James Han, Matthew Haynes, Elizabeth Lobos, Marcel Huntemann, Amrita Pati, Natalia N Ivanova, Konstantinos Mavromatis, Brian J Tindall, Victor Markowitz, Tanja Woyke, Hans-Peter Klenk…
    Citation: Standards in Genomic Sciences 2015 10:1
  42. Flavobacterium seoulense strain EM1321T is the type strain of Flavobacterium seoulense sp. nov., a proposed novel species within the genus Flavobacterium. This strain is a Gram-reaction-negative, aerobic, rod-sh...

    Authors: Su-Kyoung Shin, Heemoon Goo, Yong-Joon Cho, Soonsung Kwon, Dongeun Yong and Hana Yi
    Citation: Standards in Genomic Sciences 2014 9:34
  43. Halomonas zincidurans strain B6T was isolated from a deep-sea heavy metal rich sediment from the South Atlantic Mid-Ocean Ridge. The strain showed significant resistance to heavy metals, especially to zinc. Here...

    Authors: Ying-Yi Huo, Zheng-Yang Li, Hong Cheng, Chun-Sheng Wang and Xue-Wei Xu
    Citation: Standards in Genomic Sciences 2014 9:30
  44. This report summarizes the activities and outcomes of the second workshop of the US Culture Collection Network, formally an activity of the US National Science Foundation sponsored Research Coordination Networ...

    Authors: Kevin McCluskey, Scott Bates, Kyria Boundy-Mills, Arianna Broggiato, Anthony Cova, Philippe Desmeth, Chobi DebRoy, Deborah Fravel, George Garrity, María del Mar Jiménez Gasco, Lucy Joseph, Daniel Lindner, Michael W Lomas, Joe Morton, David Nobles, John Turner…
    Citation: Standards in Genomic Sciences 2014 9:27
  45. We present the whole genome sequence and annotation of the Coxiella burnetii strain Namibia. This strain was isolated from an aborting goat in 1991 in Windhoek, Namibia. The plasmid type QpRS was confirmed in our...

    Authors: Mathias C Walter, Caroline Öhrman, Kerstin Myrtennäs, Andreas Sjödin, Mona Byström, Pär Larsson, Anna Macellaro, Mats Forsman and Dimitrios Frangoulidis
    Citation: Standards in Genomic Sciences 2014 9:22
  46. The Gram-negative, pleomorphic, rod-shaped bacterium Ornithobacterium rhinotracheale is a cause of pneumonia and airsacculitis in poultry. It is a member of the family Flavobacteriaceae of the phylum “Bacteroidet...

    Authors: Emilie S Zehr, Darrell O Bayles, William D Boatwright, Louisa B Tabatabai and Karen B Register
    Citation: Standards in Genomic Sciences 2014 9:14
  47. Mesorhizobium loti strain R7A was isolated in 1993 in Lammermoor, Otago, New Zealand from a Lotus corniculatus root nodule and is a reisolate of the inoculant strain ICMP3153 (NZP2238) used at the site. R7A is a...

    Authors: Simon Kelly, John Sullivan, Clive Ronson, Rui Tian, Lambert Bräu, Christine Munk, Lynne Goodwin, Cliff Han, Tanja Woyke, Tatiparthi Reddy, Marcel Huntemann, Amrita Pati, Konstantinos Mavromatis, Victor Markowitz, Natalia Ivanova, Nikos Kyrpides…
    Citation: Standards in Genomic Sciences 2014 9:6