Partensky F, Garczarek L. The Photosynthetic apparatus of chlorophyll b- and d-containing cyanobacteria. In: Larkum AW, Douglas SE, Raven JA, editors. Photosynthesis in Algae. Dordrecht: Kluwer Academic Publishers; 2003. p. 29–62.
Chapter
Google Scholar
Rocap G, Larimer F, Lamerdin J, Malfatti S, Chain P, Ahlgren N, et al. Genome divergence in two Prochlorococcus ecotypes reflects oceanic niche differentiation. Nature. 2003;424:1042–7.
Article
CAS
PubMed
Google Scholar
Lewin RA. Prochloron, type genus of the Prochlorophyta. Phycologia. 1977;16:217.
Article
Google Scholar
Miyashita H, Ikemoto H, Kurano N, Miyachi S, Chihara M. Acaryochloris marina gen. et sp. nov. (Cyanobacteria), an oxygenic photosynthetic prokaryote containing chl d as a major pigment. J Phycol. 2003;39:1247–53.
Article
CAS
Google Scholar
Pinevich A, Velichko N, Ivanikova N. Cyanobacteria of the genus Prochlorothrix. Front Microbiol. 2012;3:1–13.
Article
Google Scholar
Velichko N, Averina S, Gavrilova O, Ivanikova N, Pinevich A. Probing environmental DNA reveals circum-Baltic presence and diversity of chlorophyll a/b-containing filamentous cyanobacteria (genus Prochlorothrix). Hydrobiol. 2014;736:165–77.
Article
CAS
Google Scholar
Burger-Wiersma T, Veenhius M, Korthals HJ, van de Wiel CCM, Mur LR. A new prokaryote containing chlorophylls a and b. Nature. 1986;320:262–4.
Article
CAS
Google Scholar
Burger-Wiersma T, Stal L, Mur LR. Prochlorothrix hollandica gen. nov., sp. nov., a filamentous oxygenic photoautotrophic prokaryote containing chlorophylls a and b: assignment to Prochlorothrichaceae fam. nov., and order Prochlorothrichales Florenzano, Balloni, and Materassi 1986, with emendation of the ordinal description. Int J Syst Bacteriol. 1989;39:250–7.
Article
Google Scholar
Pinevich A, Mamkaeva K, Titova N, Gavrilova O, Ermilova E, Kvitko K, et al. St. Petersburg Culture Collection (CALU): Four decades of storage and research with microscopic algae, cyanobacteria and other microorganisms. Nova Hedw. 2004;79:115–26.
Article
Google Scholar
Schyns G, Rippka R, Namane A, Campbell D, Herdman M, Houmard J. Prochlorothrix hollandica PCC 9006: genomic properties of an axenic representative of the chlorophyll a/b-containing oxyphotobacteria. Res Microbiol. 1997;148:345–54.
Article
CAS
PubMed
Google Scholar
Velichko N, Averina S, Gavrilova O, Pinevich A, Ivanikova N, Skulberg O. Polyphasic emended description of the filamentous prochlorophyte Prochlorothrix scandica Skulberg 2008. Algol Stud. 2013;141:11–27.
Article
CAS
Google Scholar
Dufresne A, Salanoubat M, Partensky F, Artiguenave F, Axmann I, Barbe V, et al. Genome sequence of the cyanobacterium Prochlorococcus marinus SS120, a nearly minimal oxyphototrophic genome. Proc Natl Acad Sci U S A. 2003;100:10020–5.
Article
CAS
PubMed
PubMed Central
Google Scholar
Biller SJ, Berube PM, Berta-Thompson J-W, Kelly L, Roggensack SE, Awad L, et al. Genomes of diverse isolates of the marine cyanobacterium Prochlorococcus. Sci Data. 2014;1:140034.
Article
CAS
PubMed
PubMed Central
Google Scholar
Donia M, Fricke W, Partensky F, Coxe J, Elshahavi SI, White JR, et al. Complex microbiome underlying secondary and primary metabolism in the tunicate-Prochloron symbiosis. Proc Natl Acad Sci U S A. 2011;108:1423–32.
Article
Google Scholar
Swingley WD, Chen M, Cheung PC, Conrad AL, Dejesa LC, Hao J, et al. Niche adaptation and genome expansion in the chlorophyll d-producing cyanobacterium Acaryochloris marina. Proc Natl Acad Sci U S A. 2008;105:2005–10.
Article
CAS
PubMed
PubMed Central
Google Scholar
Shih P, Wu D, Latifi A, Axen SD, Fewer DP, Talla E, et al. Improving the coverage of the cyanobacterial phylum using diversity-driven genome sequencing. Proc Natl Acad Sci U S A. 2013;110:1053–8.
Article
CAS
PubMed
Google Scholar
Lewin RA. Prochloron and the theory of symbiogenesis. Ann NY Acad Sci. 1981;361:325–9.
Article
CAS
PubMed
Google Scholar
Bruno WJ, Socci ND, Halpern AL. Weighted neighbor joining: a likelihood-based approach to distance-based phylogeny reconstruction. Mol Biol Evol. 2000;17(1):189–97.
Article
CAS
PubMed
Google Scholar
Castenholz RW. Phylum BX Cyanobacteria. Oxygenic Photosynthetic Bacteria. In: Garrity G, Boone DR, Castenholz RW, editors. Bergey’s Manual of Systematic Bacteriology, vol. 1. 2nd ed. New York: Springer; 2001. p. 473–600.
Chapter
Google Scholar
Field D, Garrity G, Gray T, Morrison N, Slengut J, Sterk P, et al. The minimum information about a genome sequence (MIGS) specification. Nat Biotechnol. 2008;26:541–7.
Article
CAS
PubMed
PubMed Central
Google Scholar
Bolger A, Lohse M, Usadel B. Trimmomatic: a flexible trimmer for Illumina sequence data. Bioinformatics. 2014;30:2114–20.
Article
CAS
PubMed
PubMed Central
Google Scholar
Nurk S, Bankevich A, Antipov D, Gurevich AA, Korobeynikov A, Lapidus A, et al. Assembling single-cell genomes and mini-metagenomes from chimeric MDA products. J Comp Biol. 2013;20:714–37.
Article
CAS
Google Scholar
Galardini M, et al. CONTIGuator: a bacterial genomes finishing tool for structural insights on draft genomes. Source Code Biol Med. 2011;6:11.
Article
PubMed
PubMed Central
Google Scholar
Besemer J, Lomsadze A, Borodovsky M. GeneMarkS: a self-training method for prediction of gene starts in microbial genomes. Implications for finding sequence motifs in regulatory regions. Nuc Ac Res. 2001;29:2607–18.
Article
CAS
Google Scholar
Ashburner M, Ball CA, Blake JA, Botstein D, Butler H, Cherry JM, et al. Gene ontology: tool for the unification of biology. The Gene Ontology Consortium. Nat Genet. 2000;25:25–9.
Article
CAS
PubMed
PubMed Central
Google Scholar
Tatusov RL, Galperin MY, Natale DA, Koonin EV. The COG database: a tool for genome-scale analysis of protein functions and evolution. Nucleic Acids Res. 2000;28:33–6.
Article
CAS
PubMed
PubMed Central
Google Scholar
Tamura K, Stecher G, Peterson D, Filipski A, Kumar S. MEGA6: Molecular evolutionary genetics analysis v. 6.0. Mol Biol Evol. 2013;30:2725–9.
Article
CAS
PubMed
PubMed Central
Google Scholar
Turner S, Burger-Wiersma T, Giovannoni SJ, Mur LR, Pace NR. The relationship of a prochlorophyte Prochlorothrix hollandica to green chloroplasts. Nature. 1989;26:380–2.
Article
Google Scholar
La Roche J, van der Staay GM, Partensky F, Ducret A, Aebersold R, Li R, et al. Independent evolution of the prochlorophyte and green plant chlorophyll-a/b light-harvesting proteins. Proc Natl Acad Sci USA. 1996;93:15244–8.
Article
PubMed
PubMed Central
Google Scholar
Tomitani A, Okada K, Miyashita H, Matthijs H, Ohno T, Tanaka A. Chlorophyll b and phycobilins in the common ancestor of cyanobacteria and chloroplast. Nature. 1999;400:159–62.
Article
CAS
PubMed
Google Scholar
Velichko N, Chernyaeva E, Averina S, Gavrilova O, Lapidus A, Pinevich A. Consortium of the «bichlorophylous» cyanobacterium Prochlorothrix hollandica and chemoheterotrophic partner bacteria: culture and metagenome-based description. Env Microbiol. 2015;7:623–33.
Article
CAS
Google Scholar
Zhang JY, Chen WL, Zhang CC. het R and patS, two genes necessary for heterocyst pattern formation, are widespread in filamentous nonheterocyst-forming cyanobacteria. Microbiology. 2009;155:1418–26.
Article
CAS
PubMed
Google Scholar
Woese CR, Kandler O, Wheels ML. Towards a natural system of organisms: proposal for the domains Archaea, Bacteria, and Eucarya. Proc Natl Acad Sci U S A. 1990;87:4576–9.
Article
CAS
PubMed
PubMed Central
Google Scholar
Florenzano G, Balloni W, Materassi R. Nomenclature of Prochloron didemni (Lewin 1977) sp. nov., nom. rev., Prochloron (Lewin 1976) gen. nov., nom. rev., Prochloraceae fam. nov., Prochlorales ord. nov., nom. rev. in the class Photobacteria Gibbons and Murray 1978. Int J Syst Bacteriol. 1986;36:351–3.
Article
Google Scholar