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Table 3. Nucleotide content and gene count levels of the genome

From: Non-contiguous finished genome sequence of Staphylococcus capitis CR01 (pulsetype NRCS-A)

Attribute

Value

% of totala

Genome size (bp)

2.504.472

100.00%

DNA G+C content (bp)

821.717

32.81%

DNA coding region (bp)

2.158.855

6.2%

Number of Scaffolds

26

-

Total genesb

2566

100.00%

RNA genes

97

4.00%

tRNA-enconding genes

59

2.30%

rRNA-encoding genes

4

0.20%

Protein-coding genes (CDS)

2454

96.00%

Genes assigned to COGs

1999

81.00%

Genes of unknown function

561

23.34%

Genes with transmembrane helicesc

630

25.70%

CRISPR repeats

1

-

  1. a) The total is based on either the size of the genome in base pairs or the total number of protein coding genes in the annotated genome.
  2. b) Total number of genes includes CDS, RNA genes and pseudogenes.
  3. c) Detection of transmembrane helices was performed using TMHMM v. 2.0 [40]
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Environmental Microbiome

ISSN: 2524-6372