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Table 4. Number of genes associated with the general COG functional categories

From: Complete genome sequence of the filamentous gliding predatory bacterium Herpetosiphon aurantiacus type strain (114-95T)

Code value %age Description
J 176 4.1 Translation, ribosomal structure and biogenesis
A 3 0.1 RNA processing and modification
K 370 8.7 Transcription
L 213 5.4 Replication, recombination and repair
B 2 0.1 Chromatin structure and dynamics
D 35 0.8 Cell cycle control, cell division, chromosome partitioning
Y 0 0.0 Nuclear structure
V 93 2.2 Defense mechanisms
T 393 9.2 Signal transduction mechanisms
M 261 6.1 Cell wall/membrane/envelope biogenesis
N 14 0.3 Cell motility
Z 0 0.0 Cytoskeleton
W 0 0.0 Extracellular structures
U 56 1.3 Intracellular trafficking and secretion, and vesicular transport
O 142 3.3 Posttranslational modification, protein turnover, chaperones
C 205 4.8 Energy production and conversion
G 276 6.5 Carbohydrate transport and metabolism
E 307 7.2 Amino acid transport and metabolism
F 92 2.2 Nucleotide transport and metabolism
H 174 4.1 Coenzyme transport and metabolism
I 128 3.0 Lipid transport and metabolism
P 172 4.0 Inorganic ion transport and metabolism
Q 143 3.4 Secondary metabolites biosynthesis, transport and catabolism*
R 647 15.1 General function prediction only
S 349 8.2 Function unknown
- 1,823 32.2 Not in COGs
  1. * manual annotation yielded 6.4% genes in the secondary metabolites biosynthesis, transport and catabolism category.