Skip to main content


We’d like to understand how you use our websites in order to improve them. Register your interest.

Genome sequences published outside of Standards in Genomic Sciences, January–March 2012


The purpose of this table is to provide the community with a citable record of publications of ongoing genome sequencing projects that have led to a publication in the scientific literature. While our goal is to make the list complete, there is no guarantee that we may have omitted one or more publications appearing in this time frame. Readers and authors who wish to have publications added to subsequent versions of this list are invited to provide the bibliographic data for such references to the SIGS editorial office.

Phylum Crenarchaeota

Pyrobaculum strain 1860, sequence accession CP003098 [1]

Phylum Deinococcus-Thermus

Thermus sp.” Strain CCB_US3_UF1, sequence accession CP003126 (chromosome), CP003127 (plasmid) [2]

Phylum Proteobacteria

Achromobacter arsenitoxydans” SY8, sequence accession AGUF00000000 [3]

Acidovorax sp. Strain NO1, sequence accession AGTS00000000 [4]

Acinetobacter baumannii AB4857, sequence accession AHAG00000000 [5]

Acinetobacter baumannii AB5075, sequence accession AHAH00000000 [5]

Acinetobacter baumannii AB5256, sequence accession AHAI00000000 [5]

Acinetobacter baumannii AB5711, sequence accession AHAJ00000000 [5]

Aeromonas salmonicida, sequence accession AGVO00000000 [6]

Aggregatibacter actinomycetemcomitans RHAA1, sequence accession AHGR00000000 [7]

Agrobacterium tumefaciens 5A, sequence accession AGVZ00000000 [8]

Azoarcus sp. Strain KH32C, sequence accession AP012304, AP012305 [9]

Burkholderia sp. Strain YI23, sequence accession CP003087 (Chromosome 1), CP003088 (Chromosome 2), CP003089 (Chromosome 3), CP003090 (plasmid BYI23_D), CP003091 (plasmid BYI23_E) CP003092 (plasmid BYI23_F) [10]

Brucella suis VBI22, sequence accession CP003128, CP003129 [11]

Comamonas testosteroni ATCC 11996, sequence accession AHIL00000000 [12]

Commensalibacter intestini” A911T, sequence accession AGFR00000000 [13]

Edwardsiella ictaluri, sequence accession CP001600.1 [14]

Enterobacter cloacae subsp. dissolvens SDM, sequence accession AGSY00000000 [15]

Gluconobacter morbifer” G707T, sequence accession AGQV00000000 [16]

Legionella dumoffii TEX-KL, sequence accession AGVT00000000 [17]

Legionella dumoffii NY-23, sequence accession AGVU00000000 [17]

Legionella pneumophila serogroup 12 Strain 570-CO-H, sequence accession CP003192 [18]

Marinobacterium stanieri S30, sequence accession AFPL00000000 [19]

Marinobacter manganoxydans” MnI7-9, sequence accession CP001978 to CP001980 [20]

Mesorhizobium alhagi CCNWXJ12-2T, sequence accession AHAM00000000 [21]

Mesorhizobium amorphae, sequence accession AGSN00000000 [22]

Methylomicrobium alcaliphilum 20Z, sequence accession FO082060 and FO082061 [23]

Mitsuaria sp. Strain H24L5A, sequence accession CAFG01000001 to CAFG01000607 [24]

Novosphingobium pentaromativorans US6-1, sequence accession AGFM00000000 [25]

Pantoea ananatis B1-9, sequence accession CAEI01000001 to CAEI01000169 [26]

Pantoea ananatis LMG 5342, sequence accession HE617160 (chromosome), HE617161 (pPANA10) [27]

Pantoea ananatis Strain PA13, sequence accession CP003085 and CP003086 [28]

Pseudomonas aeruginosa, sequence accession AFXI00000000 [29]

Pseudomonas aeruginosa, sequence accession AFXJ00000000 [29]

Pseudomonas aeruginosa, sequence accession AFXK00000000 [29]

Pseudomonas chlororaphis GP72, sequence accession AHAY01000000 [30]

Pseudomonas fluorescens F113, sequence accession CP003150 [31]

Pseudomonas fluorescens Wayne 1R, sequence accession CADX01000001 to CADX01000090 [32]

Pseudomonas fluorescens Wood1R, sequence accession CAFF01000001 to CAFF01001437 [32]

Pseudomonas psychrotolerans L19, sequence accession AHBD00000000 [33]

Pseudoalteromonas rubra ATCC 29570T, sequence accession AHCD00000000 [34]

Pseudomonas stutzeri SDM-LAC, sequence accession AGSX00000000 [35]

Pseudoxanthomonas spadix BD-a59, sequence accession CP003093 [36]

Rickettsia slovaca, sequence accession CP002428 [37]

Salmonella enterica serovar Pullorum RKS5078, sequence accession CP003047 [38]

Sinorhizobium meliloti CCNWSX0020, sequence accession AGVV00000000 [39]

Sphingobium sp. Strain SYK-6, sequence accession AP012222 and AP012223 [40]

Sphingomonas sp. Strain PAMC 26605, sequence accession AHIS00000000 [41]

Stenotrophomonas maltophilia RR-10, sequence accession AGRB00000000 [42]

Strain HIMB30, sequence accession AGIG00000000 [43]

Taylorella equigenitalis, sequence accession CP003059 [44]

Vibrio campbellii DS40M4, sequence accession AGIE00000000 [45]

Vibrio fischeri SR5, sequence accession AHIH00000000 [46]

Yersinia enterocolitica, sequence accession AGQO00000000 [47]

Phylum Tenericutes

Candidatus Mycoplasma haemominutum, sequence accession HE613254 [48]

Mycoplasma haemocanis strain Illinois, sequence accession CP003199 [49]

Mycoplasma iowae, sequence accession AGFP00000000 [50]

Mycoplasma pneumoniae Type 2a Strain 309, sequence accession AP012303 [51]

Phylum Firmicutes

Bacillus cereus F837/76, sequence accession CP003187 (chromosome) CP003188 (pF837_55kb), CP003189 (pF837_10kb) [52]

Brevibacillus laterosporus Strain GI-9, sequence accession CAGD01000001 to CAGD01000061 [53]

Clostridium sporogenes PA 3679, sequence accession AGAH00000000 [54]

Enterococcus mundtii CRL1656, sequence accession AFWZ00000000.1 [55]

Geobacillus thermoleovorans CCB_US3_UF5, sequence accession CP003125 [56]

Lactobacillus curvatus Strain CRL705, sequence accession AGBU01000000 [57]

Lactobacillus rhamnosus ATCC 8530, sequence accession CP003094 [58]

Lactobacillus rhamnosus R0011, sequence accession AGKC00000000 [59]

Lactococcus garvieae TB25, sequence accession AGQX01000000 [60]

Lactococcus garvieae LG9, sequence accession AGQY01000000 [60]

Lactococcus lactis subsp. cremoris A76, sequence accession CP003132 (chromosome), CP003136 (pQA505), CP003135 (PQA518), CP003134 (pQA549), CP003133 (pQA554) [61]

Leuconostoc citreum LBAE C10, sequence accession CAGE00000000 [62]

Leuconostoc citreum LBAE C11, sequence accession CAGF00000000 [62]

Leuconostoc citreum LBAE E16, sequence accession CAGG00000000 [62]

Leuconostoc mesenteroides subsp. mesenteroides Strain J18, sequence accession CP003101 [63]

Paenibacillus peoriae Strain KCTC 3763T, sequence accession AGFX00000000 [64]

Pediococcus acidilactici MA18/5M, sequence accession AGKB00000000 [65]

Pediococcus claussenii ATCC BAA-344T, sequence accession CP003137 (chromosome), CP003138 (pPECL-1), CP003139 (pPECL-2), CP003140 (pPECL-3), CP003141 (pPECL-4), CP003142 (pPECL-5), CP003143 (pPECL-6), CP003144 (pPECL-7), CP003145 (pPECL-8) [66]

Staphylococcus aureus M013, sequence accession CP003166 [67]

Staphylococcus aureus subsp. aureus TW20, sequence accession FN433596 [68]

Weissella confusa LBAE C39-2, sequence accession CAGH00000000 [69]

Phylum Actinobacteria

Corynebacterium casei, sequence accession CAFW01000001 to CAFW01000106 [70]

Corynebacterium glutamicum, sequence accession AGQQ00000000 [71]

Leucobacter chromiiresistens, sequence accession AGCW00000000 [72]

Mycobacterium abscessus, sequence accession AGQU00000000 [73]

Propionibacterium acnes ST9, sequence accession CP003195 [74]

Propionibacterium acnes ST22, sequence accession CP003196 [74]

Propionibacterium acnes ST27, sequence accession CP003197 [74]

Saccharomonospora azurea SZMC 14600, sequence accession AHBX00000000 [75]

Streptomyces sp. Strain TOR3209, sequence accession AGNH00000000 [76]

Streptomyces sp. Strain W007, sequence accession AGSW00000000 [77]

Phylum Spirochaetes

Borrelia valaisiana VS116, sequence accession ABCY02000001 (chromosome), CP001439 (plasmid Ip17), CP001437 (Ip25), CP001440 (plasmid Ip 28-3), CP001442 (plasmid Ip28-8), CP001436 (Ip 36), CP001433 (plasmid Ip 54), CP001438 (plasmid cp9), CP001432 (plasmid cp26), CP001441 (plasmid cp32-5), CP001434 (plasmid cp32-7), CP001435 (plasmid cp32-10) [78]

Borrelia bissettii” DN127, sequence accession CP002746 (chromosome), CP002756 (plasmid Ip12), CP002757 (plasmid Ip25), CP002758 (plasmid 28-3), CP002759 (plasmid Ip 28-4), CP002760 (Ip28-7), CP002761 (plasmid Ip54), CP002762 (plasmid Ip56), CP002755 (plasmid cp9), CP002747 (plasmid cp26), CP002749 (plasmid cp32-3), CP002750 (plasmid cp32-4), CP002751 (plasmid 32-5), CP002752 (plasmid cp32-6), CP002753 (plasmid cp32-7), CP0027554 (plasmid cp32-9), CP002748 (plasmid cp32-11) [78]

Borrelia spielmanii A14S, sequence accession ABKB02000001 (chromosome), CP001468 (plasmid Ip17), CP001471 (Ip28-3), CP001470 (plasmid Ip28-4), CP001465 (plasmid Ip28-2), CP001466 (plasmid Ip36), CP001464 (plasmid Ip38), CP001469 (plasmid Ip54), ABKB02000016, ABKB02000020 (plasmid cp9), CP001467 (plasmid cp26), ABKB02000026 (plasmid cp32-3), ABKB02000031 (plasmid 32-5), ABKB02000021 (plasmid cp32-12), ABKB02000014 (unidentified) [78]

Non-Bacterial genomes

Aspergillus flavus, sequence accession GSE32177 [79]

Bacteriophage SPN3UB, sequence accession JQ288021 [80]

Bamboo mitochondria, sequence accession JQ235166 to JQ235179 [81]

Boea hygrometrica chloroplast, sequence accession JN107811 [82]

Boea hygrometrica mitochondrial, sequence accession JN107812 [82]

Canine Picornavirus, sequence accession JN831356 [83]

Chandipura virus (CHPV) CIN0327, sequence accession GU212856.1 [84]

Chandipura virus (CHPV) CIN0451, sequence accession GU212857.1 [84]

Chandipura virus (CHPV) CIN0751, sequence accession GU212858.1 [84]

Chandipura virus (CHPV) CIN0755, sequence accession GU190711.1 [84]

Chinese Porcine Parvovirus Strain PPV2010, sequence accession JN872448 [85]

Common midwife toad megavirus, sequence accession JQ231222 [86]

Dengue Virus Serotype 4, sequence accession JN983813 [87]

Duck Tembusu Virus, sequence accession JF270480 [88]

Duck Tembusu Virus, sequence accession JQ314464 [88]

Duck Tembusu Virus, sequence accession JQ314465 [88]

Emiliania huxleyi Virus 202, sequence accession HQ634145 [89]

Emiliania huxleyi Virus EhV-88, sequence accession JF974310 [89]

Emiliania huxleyi EhV-201, sequence accession JF974311 [89]

Emiliania huxleyi EhV-207, sequence accession JF974317 [89]

Emiliania huxleyi EhV-208, sequence accession JF974318 [89]

Glarea lozoyensis, sequence accession GUE00000000 [90]

Nannochloropis gaditana, sequence accession AGNI00000000 [91]

Oryza sativa cv., sequence accession DRA000499 [92]

Partetravirus, sequence accession JN990269 [93]

Porcine Bocavirus PBoV5, sequence accession JN831651 [94]

Porcine epidemic diarrhea virus, sequence accession JQ282909 [95]

Pseudomonas aeruginosa lytic bacteriophage PA1Ø, sequence accession HM624080 [96]

Pseudomonas fluorescens phage OBP, sequence accesssion JN627160 [97]

RNA Virus from Avocado, sequence accession JN880414 [98]

Salmonella enterica Serovar Typhimurium Bacteriophage SPN1S, sequence accession JN391180 [99]

Schistosoma haematobium, sequence accession PRJNA78265 [100]

Schistosoma mansoni, sequence accession ERP00038 [101]

Stenopirates sp., sequence accession JN100019 [102]

T7-Like Virus, sequence accession JN651747 [103]

Vibrio harveyi siphophage VHS1, sequence accession JF713456 [104]

Tyrolean ice man, sequence accession ERP001144 [105]


  1. 1.

    Mardanov AV, Gumerov VM, Slobodkina GB, Beletsky AV, Bonch-Osmolovskaya EA, Ravin NV, Skryabin KG. Complete genome sequence of strain 1860, a crenarchaeon of the genus pyrobaculum able to grow with various electron acceptors. J Bacteriol 2012; 194.727–728.

  2. 2.

    Teh BS, Abdul Rahman AY, Saito JA, Hou S, Alam M. Complete Genome Sequence of the Thermophilic Bacterium Thermus sp. Strain CCB_US3_UF1. J Bacteriol 2012; 194:1240. PubMed

  3. 3.

    Li X, Hu Y, Gong J, Lin Y, Johnstone L, Rensing C, Wang G. Genome Sequence of the Highly Efficient Arsenite-Oxidizing Bacterium Achromobacter arsenitoxydans SY8. J Bacteriol 2012; 194:1243–1244. PubMed

  4. 4.

    Huang Y, Li H, Rensing C, Zhao K, Johnstone L, Wang G. Genome Sequence of the Facultative Anaerobic Arsenite-Oxidizing and Nitrate-Reducing Bacterium Acidovorax sp. Strain NO1. J Bacteriol 2012; 194:1635–1636. PubMed

  5. 5.

    Zurawski DV, Thompson MG, McQueary CN, Matalka MN, Sahl JW, Craft DW, Rasko DA. Genome Sequences of Four Divergent Multidrug-Resistant Acinetobacter baumannii Strains Isolated from Patients with Sepsis or Osteomyelitis. J Bacteriol 2012; 194:1619–1620. PubMed

  6. 6.

    Charette SJ, Brochu F, Boyle B, Filion G, Tanaka KH, Derome N. Draft genome sequence of the virulent strain 01-B526 of the fish pathogen Aeromonas salmonicida. J Bacteriol 2012; 194:722–723. PubMed

  7. 7.

    Karched M, Furgang D, Planet PJ, DeSalle R, Fine DH. Genome Sequence of Aggregatibacter actinomycetemcomitans RHAA1, Isolated from a Rhesus Macaque, an Old World Primate. J Bacteriol 2012; 194:1275–1276. PubMed

  8. 8.

    Hao X, Lin Y, Johnstone L, Liu G, Wang G, Wei G, McDermott T, Rensing C. Genome sequence of the arsenite-oxidizing strain Agrobacterium tumefaciens 5A. J Bacteriol 2012; 194:903. PubMed

  9. 9.

    Nishizawa T, Tago K, Oshima K, Hattori M, Ishii S, Otsuka S, Senoo K. Complete Genome Sequence of the Denitrifying and N2O-Reducing Bacterium Azoarcus sp. Strain KH32C. J Bacteriol 2012; 194:1255. PubMed

  10. 10.

    Lim JS, Choi BS, Choi AY, Kim KD, Kim DI, Choi IY, Ka JO. Complete genome sequence of the fenitrothion-degrading Burkholderia sp. strain YI23. J Bacteriol 2012; 194:896. PubMed

  11. 11.

    Tae H, Shallom S, Settlage R, Hawkins GN, Adams LG, Garner HR. Complete genome sequence of Brucella suis VBI22, isolated from bovine milk. J Bacteriol 2012; 194:910. PubMed

  12. 12.

    Gong W, Kisiela M, Schilhabel MB, Xiong G, Maser E. Genome Sequence of Comamonas testosteroni ATCC 11996, a Representative Strain Involved in Steroid Degradation. J Bacteriol 2012; 194:1633–1634. PubMed

  13. 13.

    Kim EK, Kim SH, Nam HJ, Choi MK, Lee KA, Choi SH, Seo YY, You H, Kim B, Lee WJ. Draft Genome Sequence of Commensalibacter intestini A911T, a Symbiotic Bacterium Isolated from Drosophila melanogaster Intestine. J Bacteriol 2012; 194:1246. PubMed

  14. 14.

    Williams ML, Gillaspy AF, Dyer DW, Thune RL, Waldbieser GC, Schuster SC, Gipson J, Zaitshik J, Landry C, Banes MM, et al. Genome sequence of Edwardsiella ictaluri 93–146, a strain associated with a natural channel catfish outbreak of enteric septicemia of catfish. J Bacteriol 2012; 194:740–741. PubMed

  15. 15.

    Xu Y, Wang A, Tao F, Su F, Tang H, Ma C, Xu P. Genome sequence of Enterobacter cloacae subsp. dissolvens SDM, an efficient biomass-utilizing producer of platform chemical 2,3-butanediol. J Bacteriol 2012; 194:897–898. PubMed

  16. 16.

    Kim EK, Kim SH, Nam HI, Choi MK, Lee KA, Choi SH, Seo YY, You H, Kim B, Lee WJ. Draft Genome Sequence of Gluconobacter morbifer G707T, a Pathogenic Gut Bacterium Isolated from Drosophila melanogaster Intestine. J Bacteriol 2012; 194:1245. PubMed

  17. 17.

    Qin T, Cui Y, Cen Z, Liang T, Ren H, Yang X, Zhao X, Liu Z, Xu L, Li D, et al. Draft Genome Sequences of Two Legionella dumoffii Strains, TEX-KL and NY-23. J Bacteriol 2012; 194:1251–1252. PubMed

  18. 18.

    Amaro F, Gilbert JA, Owens S, Trimble W, Shuman HA. Whole-Genome Sequence of the Human Pathogen Legionella pneumophila Serogroup 12 Strain 570-CO-H. J Bacteriol 2012; 194:1613–1614. PubMed

  19. 19.

    Choi YU, Kwon YK, Ye BR, Hyun JH, Heo SI, Affan A, Yoon KT, Park HS, Oh C, Kang DH. Draft Genome Sequence of Marinobacterium stanieri S30, a Strain Isolated from a Coastal Lagoon in Chuuk State in Micronesia. J Bacteriol 2012; 194:1260. PubMed

  20. 20.

    Wang H, Li H, Shao Z, Liao S, Iohnstone L, Rensing C, Wang G. Genome sequence of deep-sea manganese-oxidizing bacterium Marinobacter manganoxydans MnI7-9. J Bacteriol 2012; 194:899–900. PubMed

  21. 21.

    Zhou M, Chen W, Chen H, Wei G. Draft Genome Sequence of Mesorhizobium alhagi CCNWXI12-2T, a Novel Salt-Resistant Species Isolated from the Desert of Northwestern China. J Bacteriol 2012; 194:1261–1262. PubMed

  22. 22.

    Hao X, Lin Y, Johnstone L, Baltrus DA, Miller SJ, Wei G, Rensing C. Draft genome sequence of plant growth-promoting rhizobium Mesorhizobium amorphae, isolated from Zinc-Lead mine tailings. J Bacteriol 2012; 194:736–737. PubMed

  23. 23.

    Vuilleumier S, Khmelenina VN, Bringel F, Reshetnikov AS, Lajus A, Mangenot S, Rouy Z, Op den Camp HIM, Ietten MSM, Dispirito AA, et al. Genome sequence of the haloalkaliphilic methanotrophic bacterium Methylomicrobium alcaliphilum 20Z. J Bacteriol 2012; 194:551–552. PubMed

  24. 24.

    Rong X, Gurel FB, Meulia T, McSpadden Gardener BB. Draft genome sequences of the biocontrol bacterium Mitsuaria sp. strain H24L5A. J Bacteriol 2012; 194:734–735. PubMed

  25. 25.

    Luo YR, Kang SG, Kim SJ, Kim MR, Li N, Lee JH, Kwon KK. Genome sequence of benzo(a)pyrene-degrading bacterium Novosphingobium pentaromativorans US6-1. J Bacteriol 2012; 194:907. PubMed

  26. 26.

    Kim HJ, Lee JH, Kang BR, Rong X, McSpadden Gardener BB, Ji HJ, Park CS, Kim YC. Draft genome sequence of Pantoea ananatis B1-9, a non-pathogenic plant growth-promoting bacterium. J Bacteriol 2012; 194:729. PubMed

  27. 27.

    De Maayer P, Chan WY, Rezzonico F, Bühlmann A, Venter SN, Blom J, Goesmann A, Frey JE, Smits THM, Duffy B, et al. Complete Genome Sequence of Clinical Isolate Pantoea ananatis LMG 5342. J Bacteriol 2012; 194:1615–1616. PubMed

  28. 28.

    Choi O, Lim JY, Seo YS, Hwang I, Kim J. Complete genome sequence of the rice pathogen Pantoea ananatis strain PA13. J Bacteriol 2012; 194:531. PubMed

  29. 29.

    Boyle B, Fernandez L, Laroche J, Kukavica-Ibrulj I, Mendes CMF, Hancock RW, Levesque RC. Complete genome sequences of three Pseudomonas aeruginosa isolates with phenotypes of polymyxin B adaptation and inducible resistance. J Bacteriol 2012; 194:529–530. PubMed

  30. 30.

    Shen X, Chen M, Hu H, Wang W, Peng H, Xu P, Zhang X. Genome Sequence of Pseudomonas chlororaphis GP72, a Root-Colonizing Biocontrol Strain. J Bacteriol 2012; 194:1269–1270. PubMed

  31. 31.

    Redondo-Nieto M, Barret M, Morrisey JP, Germaine K, Martínez-Granero F, Barahona E, Navazo A, Sánchez-Contreras M, Moynihan JA, Giddens SR, et al. Genome Sequence of the Biocontrol Strain Pseudomonas fluorescens F113. J Bacteriol 2012; 194:1273–1274. PubMed

  32. 32.

    Rong X, Baysal Gurel F, Meulia T, McSpadden Gardener BB. Draft genome sequences of the Pseudomonas fluorescens biocontrol strains Wayne1R and Wood1R. J Bacteriol 2012; 194:724–725. PubMed

  33. 33.

    Espírito Santo C, Lin Y, Hao X, Wei G, Rensing C, Grass G. Draft Genome Sequence of Pseudomonas psychrotolerans L19, Isolated from Copper Alloy Coins. J Bacteriol 2012; 194:1623–1624. PubMed

  34. 34.

    Xie BB, Shu YL, Qin QL, Rong JC, Zhang XY, Chen XL, Zhou BC, Zhang YZ. Genome Sequence of the Cycloprodigiosin-Producing Bacterial Strain Pseudoalteromonas rubra ATCC 29570T. J Bacteriol 2012; 194:1637–1638. PubMed

  35. 35.

    Jiang T, Gao C, Su F, Zhang W, Hu C, Dou P, Zheng Z, Tao F, Ma C, Xu P. Genome sequence of Pseudomonas stutzeri SDM-LAC, a typical strain for studying the molecular mechanism of lactate utilization. J Bacteriol 2012; 194:894–895. PubMed

  36. 36.

    Lee SH, Jin HM, Lee HJ, Kim JM, Jeon CO. Complete genome sequence of the BTEX-degrading bacterium Pseudoxanthomonas spadix BD-a59. J Bacteriol 2012; 194:544. PubMed

  37. 37.

    Fournier PE, El Karkouri K, Robert C, Médigue C, Raoult D. Complete Genome Sequence of Rickettsia slovaca, the Agent of Tick-Borne Lymphadenitis. J Bacteriol 2012; 194:1612. PubMed

  38. 38.

    Feng Y, Xu HF, Li QH, Zhang SY, Wang CX, Zhu DL, Cao FL, Li YG, Johnston RN, Zhou J, et al. Complete genome sequence of Salmonella enterica serovar Pullorum RKS5078. J Bacteriol 2012; 194:744. PubMed

  39. 39.

    Li Z, Ma Z, Hao X, Wei G. Draft Genome Sequence of Sinorhizobium meliloti CCNWSX0020, a Nitrogen-Fixing Symbiont with Copper Tolerance Capability Isolated from Lead-Zinc Mine Tailings. J Bacteriol 2012; 194:1267–1268. PubMed

  40. 40.

    Masai E, Kamimura N, Kasai D, Oguchi A, Ankai A, Fukui S, Takahashi M, Yashiro I, Sasaki H, Harada T, et al. Complete genome sequence of Sphingobium sp. strain SYK-6, a degrader of lignin-derived biaryls and monoaryls. J Bacteriol 2012; 194:534–535. PubMed

  41. 41.

    Shin SC, Ahn DH, Lee JK, Kim SJ, Hong SG, Kim EH, Park H. Genome Sequence of Sphingomonas sp. Strain PAMC 26605, Isolated from Arctic Lichen (Ochrolechia sp.). J Bacteriol 2012; 194:1607. PubMed

  42. 42.

    Zhu B, Liu H, Tian WX, Fan XY, Li B, Zhou XP, Iin GL, Xie GL. Genome Sequence of Stenotrophomonas maltophilia RR-10, Isolated as an Endophyte from Rice Root. J Bacteriol 2012; 194:1280–1281. PubMed

  43. 43.

    Huggett MJ, Rappé MS. Genome sequence of strain HIMB30, a novel member of the marine Gammaproteobacteria. J Bacteriol 2012; 194:732–733. PubMed

  44. 44.

    Hébert L, Moumen B, Pons N, Duquesne F, Breuil MF, Goux D, Batto JM, Laugier C, Renault P, Petry S. Genomic characterization of the Taylorella genus. PLoS ONE 2012; 7:e29953. PubMed

  45. 45.

    Dias GM, Thompson CC, Fishman B, Naka H, Haygood MG, Crosa JH, Thompson FL. Genome sequence of the marine bacterium Vibrio campbellii DS40M4, isolated from open ocean water. J Bacteriol 2012; 194:904. PubMed

  46. 46.

    Gyllborg MC, Sahl JW, Cronin DC, Rasko DA, Mandel MJ. Draft Genome Sequence of Vibrio fischeri SR5, a Strain Isolated from the Light Organ of the Mediterranean Squid Sepiola robusta. J Bacteriol 2012; 194:1639. PubMed

  47. 47.

    Klinzing DC, Matias RR, Skowronski E, Alvarez M, Liles V, Dimamay MP, Natividad FF. Shotgun genome sequence of a Yersinia enterocolitica isolate from the Philippines. J Bacteriol 2012; 194:542–543. PubMed

  48. 48.

    Barker EN, Darby AC, Helps CR, Peters IR, Hughes MA, Radford AD, Novacco M, Boretti FS, Hofmann-Lehmann R, Tasker S. Genome sequence for “Candidatus Mycoplasma haemominutum,” a low-pathogenicity Hemoplasma species. J Bacteriol 2012; 194:905–906. PubMed

  49. 49.

    do Nascimento NC, Guimaraes AMS, Santos AP, SanMiguel PJ, Messick JB. Complete Genome Sequence of Mycoplasma haemocanis Strain Illinois. J Bacteriol 2012; 194:1605–1606. PubMed

  50. 50.

    Wei S, Guo Z, Li T, Zhang T, Li X, Zhou Z, Li Z, Liu M, Luo R, Bi D, et al. Genome sequence of Mycoplasma iowae strain 695, an unusual pathogen causing deaths in Turkeys. J Bacteriol 2012; 194:547–548. PubMed

  51. 51.

    Kenri T, Horino A, Matsui M, Sasaki Y, Suzuki S, Narita M, Ohya H, Okazaki N, Shibayama K. Complete Genome Sequence of Mycoplasma pneumoniae Type 2a Strain 309, Isolated in Iapan. J Bacteriol 2012; 194:1253–1254. PubMed

  52. 52.

    Auger S, Galleron N, Ségurens B, Dossat C, Bolotin A, Wincker P, Sorokin A. Complete Genome Sequence of the Highly Hemolytic Strain Bacillus cereus F837/76. J Bacteriol 2012; 194:1630. PubMed

  53. 53.

    Sharma V, Singh PK, Midha S, Ranjan M, Korpole S, Patil PB. Genome Sequence of Brevibacillus laterosporus Strain GI-9. J Bacteriol 2012; 194:1279. PubMed

  54. 54.

    Bradbury M, Greenfield P, Midgley D, Li D, Tran-Dinh N, Vriesekoop F, Brown JL. Draft Genome Sequence of Clostridium sporogenes PA 3679, the Common Nontoxigenic Surrogate for Proteolytic Clostridium botulinum. J Bacteriol 2012; 194:1631–1632. PubMed

  55. 55.

    Magni C, Espeche C, Repizo GD, Saavedra L, Suárez CA, Blancato VS, Espariz M, Esteban L, Raya RR, Font de Valdez G, et al. Draft genome sequence of Enterococcus mundtii CRL1656. J Bacteriol 2012; 194:550. PubMed

  56. 56.

    Muhd Sakaff MKL, Abdul Rahman AY, Saito JA, Hou S, Alam M. Complete Genome Sequence of the Thermophilic Bacterium Geobacillus thermoleovorans CCB_US3_UF5. J Bacteriol 2012; 194:1239. PubMed

  57. 57.

    Hebert EM, Saavedra L, Taranto MP, Mozzi F, Magni C, Nader MEF, Font de Valdez G, Sesma F, Vignolo G, Raya RR. Genome sequence of the bacteriocin-producing Lactobacillus curvatus strain CRL705. J Bacteriol 2012; 194:538–539. PubMed

  58. 58.

    Pittet V, Ewen E, Bushell BR, Ziola B. Genome sequence of Lactobacillus rhamnosus ATCC 8530. J Bacteriol 2012; 194:726. PubMed

  59. 59.

    Tompkins TA, Barreau G, de Carvalho VG. Draft genome sequence of probiotic strain Lactobacillus rhamnosus R0011. J Bacteriol 2012; 194:902. PubMed

  60. 60.

    Ricci G, Ferrario C, Borgo F, Rollando A, Fortina MG. Genome Sequences of Lactococcus garvieae TB25, Isolated from Italian Cheese, and Lactococcus garvieae LG9, Isolated from Italian Rainbow Trout. J Bacteriol 2012; 194:1249–1250. PubMed

  61. 61.

    Wegmann U, O’Connell-Motherway M, Zomer A, Buist G, Shearman C, Canchaya C, Ventura M, Goesmann A, Gasson MJ, Kuipers OP, et al. Complete Genome Sequence of the Prototype Lactic Acid Bacterium Lactococcus lactis subsp. cremoris MG1363. J Bacteriol 2007; 189:3256–3270. PubMed

  62. 62.

    Laguerre S, Amari M, Vuillemin M, Robert H, Loux V, Klopp C, Morel S, Gabriel B, Remaud-Siméon M, Gabriel V, et al. Genome Sequences of Three Leuconostoc citreum Strains, LBAE C10, LBAE C11, and LBAE E16, Isolated from Wheat Sourdoughs. J Bacteriol 2012; 194:1610–1611. PubMed

  63. 63.

    Jung JY, Lee SH, Lee SH, Jeon CO. Complete genome sequence of Leuconostoc mesenteroides subsp. mesenteroides Strain J18, isolated from Kimchi. J Bacteriol 2012; 194:730–731. PubMed

  64. 64.

    Jeong H, Choi SK, Park SY, Kim SH, Park SH. Draft Genome Sequence of Paenibacillus peoriae Strain KCTC 3763T. J Bacteriol 2012; 194:1237–1238. PubMed

  65. 65.

    Barreau G, Tompkins TA, de Carvalho VG. Draft genome sequence of probiotic strain Pediococcus acidilactici MA18/5M. J Bacteriol 2012; 194:901. PubMed

  66. 66.

    Pittet V, Abegunde T, Marfleet T, Haakensen M, Morrow K, Jayaprakash T, Schroeder K, Trost B, Byrns S, Bergsveinson J, et al. Complete Genome Sequence of the Beer Spoilage Organism Pediococcus claussenii ATCC BAA-344T. J Bacteriol 2012; 194:1271–1272. PubMed

  67. 67.

    Huang TW, Chen FJ, Miu WC, Liao TL, Lin AC, Huang IW, Wu KM, Tsai SF, Chen YT, Lauderdale TLY. Complete Genome Sequence of Staphylococcus aureus M013, a pvl-Positive, ST59-SCCmec Type V Strain Isolated in Taiwan. J Bacteriol 2012; 194:1256–1257. PubMed

  68. 68.

    Yamamoto T, Takano T, Higuchi W, Iwao Y, Singur O, Reva I, Otsuka Y, Nakayashiki T, Mori H, Reva G, et al. Comparative genomics and drug resistance of a geographic variant of ST239 methicillin-resistant Staphylococcus aureus emerged in Russia. PLoS ONE 2012; 7:e29187. PubMed

  69. 69.

    Amari M, Laguerre S, Vuillemin M, Robert H, Loux V, Klopp C, Morel S, Gabriel B, Remaud-Siméon M, Gabriel V, et al. Genome Sequence of Weissella confusa LBAE C39-2, Isolated from a Wheat Sourdough. J Bacteriol 2012; 194:1608–1609. PubMed

  70. 70.

    Monnet C, Loux V, Bento P, Gibrat JF, Straub C, Bonnarme P, Landaud S, Irlinger F. Genome Sequence of Corynebacterium casei UCMA 3821, isolated from a smear-ripened cheese. J Bacteriol 2012; 194:738–739. PubMed

  71. 71.

    Lv Y, Liao J, Wu Z, Han S, Lin Y, Zheng S. Genome sequence of Corynebacterium glutamicum ATCC 14067, which provides insight into amino acid biosynthesis in coryneform bacteria. J Bacteriol 2012; 194:742–743. PubMed

  72. 72.

    Sturm G, Buchta K, Kurz T, Rensing SA, Gescher J. Draft genome sequence of Leucobacter chromiiresistens, an extremely chromium-tolerant strain. J Bacteriol 2012; 194:540–541. PubMed

  73. 73.

    Chan J, Halachev M, Yates E, Smith G, Pallen M. Whole-genome sequence of the emerging pathogen Mycobacterium abscessus strain 47J26. J Bacteriol 2012; 194:549. PubMed

  74. 74.

    Vörös A, Horváth B, Hunyadkürti J, McDowell A, Barnard E, Patrick S, Nagy I. Complete Genome Sequences of Three Propionibacterium acnes Isolates from the Type IA2 Cluster. J Bacteriol 2012; 194:1621–1622. PubMed

  75. 75.

    Csepregi K, Valasek A, Pénzes Á, Tóth Z, Kiss El, Kerepesi I, Horváth B, Nagy I, Fekete C. Draft Genome Sequence of an Efficient Antibiotic-Producing Industrial Strain of Saccharomonospora azurea, SZMC 14600. J Bacteriol 2012; 194:1263. PubMed

  76. 76.

    Hu D, Li X, Chang Y, He H, Zhang C, Jia N, Li H, Wang Z. Genome Sequence of Streptomyces sp. Strain TOR3209, a Rhizosphere Microecology Regulator Isolated from Tomato Rhizosphere. J Bacteriol 2012; 194:1627. PubMed

  77. 77.

    Qin S, Zhang H, Li F, Zhu B, Zheng H. Draft Genome Sequence of Marine Streptomyces sp. Strain W007, Which Produces Angucyclinone Antibiotics with a Benz[a]anthracene Skeleton. J Bacteriol 2012; 194:1628–1629. PubMed

  78. 78.

    Schutzer SE, Fraser-Liggett CM, Qiu WG, Kraiczy P, Mongodin EF, Dunn JJ, Luft BJ, Casjens SR. Whole-genome sequences of Borrelia bissettii, Borrelia valaisiana, and Borrelia spielmanii. J Bacteriol 2012; 194:545–546. PubMed

  79. 79.

    Liu SY, Lin JQ, Wu HL, Wang CC, Huang SJ, Luo YF, Sun JH, Zhou JX, Yan SJ, He JG, et al. Bisulfite sequencing reveals that Aspergillus flavus holds a hollow in DNA methylation. PLoS ONE 2012; 7:e30349. PubMed

  80. 80.

    Lee JH, Shin H, Ryu S. Complete Genome Sequence of Salmonella enterica Serovar Typhimurium Bacteriophage SPN3UB. J Virol 2012; 86:3404–3405. PubMed

  81. 81.

    Ma PF, Guo ZH, Li DZ. Rapid sequencing of the bamboo mitochondrial genome using illumina technology and parallel episodic evolution of organelle genomes in grasses. PLoS ONE 2012; 7:e30297. PubMed

  82. 82.

    Zhang T, Fang Y, Wang X, Deng X, Zhang X, Hu S, Yu J. The complete chloroplast and mitochondrial genome sequences of Boea hygrometrica. Insights into the evolution of plant organellar genomes. PLoS ONE 2012; 7:e30531. PubMed

  83. 83.

    Woo PCY, Lau SKP, Choi GKY, Yip CCY, Huang Y, Tsoi HW, Yuen KY. Complete Genome Sequence of a Novel Picornavirus, Canine Picornavirus, Discovered in Dogs. J Virol 2012; 86:3402–3403. PubMed

  84. 84.

    Cherian SS, Gunjikar RS, Banerjee A, Kumar S, Arankalle VA. Whole genomes of chandipura virus isolates and comparative analysis with other rhabdoviruses. PLoS ONE 2012; 7:e30315. PubMed

  85. 85.

    Cui J, Wang X, Ren Y, Cui S, Li G, Ren X. Genome sequence of chinese porcine parvovirus strain PPV2010. J Virol 2012; 86:2379. PubMed

  86. 86.

    Mavian C, López-Bueno A, Balseiro A, Casais R, Alcamí A, Alejo A. The genome sequence of the emerging common midwife toad virus identifies an evolutionary intermediate within ranaviruses. J Virol 2012. PubMed

  87. 87.

    Naveca FG, Souza VC, Silva GAV, Maito RM, Granja F, Siqueira T, Acosta POA. Complete genome sequence of a dengue virus serotype 4 strain isolated in roraima, Brazil. J Virol 2012; 86:1897–1898. PubMed

  88. 88.

    Yun T, Zhang D, Ma X, Cao Z, Chen L, Ni Z, Ye W, Yu B, Hua J, Zhang Y, et al. Complete Genome Sequence of a Novel Flavivirus, Duck Tembusu Virus, Isolated from Ducks and Geese in China. J Virol 2012; 86:3406–3407. PubMed

  89. 89.

    Nissimov JI, Worthy CA, Rooks P, Napier IA, Kimmance SA, Henn MR, Ogata H, Allen MJ. Draft genome sequence of the Coccolithovirus Emiliania huxleyi Virus 202. J Virol 2012; 86:2380–2381. PubMed

  90. 90.

    Youssar L, Grüning BA, Erxleben A, Günther S, Hüttel W. Genome Sequence of the Fungus Glarea lozoyensis. the First Genome Sequence of a Species from the Helotiaceae Family. Eukaryot Cell 2012; 11:250. PubMed

  91. 91.

    Radakovits R, Iinkerson RE, Fuerstenberg SI, Tae H, Settlage RE, Boore JL, Posewitz MC. Draft genome sequence and genetic transformation of the oleaginous alga Nannochloropis gaditana. Nature Communications 2012; 3:686. PubMed

  92. 92.

    Abe A, Kosugi S, Yoshida K, Natsume S, Takagi H, Kanzaki H, Matsumura H, Yoshida K, Mitsuoka C, Tamiru M, et al. Genome sequencing reveals agronomically important loci in rice using MutMap. Nat Biotechnol 2012; 30:174–178. PubMed

  93. 93.

    Li B, Ma J, Xiao S, Wen L, Ni Y, Zhang X, Fang L, He K. Genome sequence of a highly prevalent porcine partetravirus in Mainland China. J Virol 2012; 86:1899. PubMed http://dx.doi.Org/10.1128/JVI.06771-11

  94. 94.

    Li B, Ma J, Xiao S, Fang L, Zeng S, Wen L, Zhang X, Ni Y, Guo R, Yu Z, et al. Complete genome sequence of a novel species of porcine cocavirus, PBoV5. J Virol 2012; 86:1286–1287. PubMed 8/JVI.06589-11

  95. 95.

    Cui J, Wang X, Ren Y, Cui S, Li G, Ren X. Genome sequence of Chinese porcine parvovirus strain PPV2010. J Virol 2012; 86:2379. PubMed 8/JVI.06852-11

  96. 96.

    Kim S, Rahman M, Kim J. Complete Genome Sequence of Pseudomonas aeruginosa Lytic Bacteriophage PA1Ø Which Resembles Temperate Bacteriophage D3112. J Virol 2012; 86:3400–3401. PubMed

  97. 97.

    Cornelissen A, Hardies SC, Shaburova OV, Krylov VN, Mattheus W, Kropinski AM, Lavigne R. Complete genome sequence of the giant virus OBP and comparative genome analysis of the diverse KZ-related phages. J Virol 2012; 86:1844–1852. PubMed

  98. 98.

    Villanueva F, Sabanadzovic S, Valverde RA, Navas-Castillo J. Complete genome sequence of a double-stranded RNA virus from avocado. J Virol 2012; 86:1282–1283. PubMed

  99. 99.

    Shin H, Lee JH, Lim JA, Kim H, Ryu S. Complete genome sequence of Salmonella enterica serovar Typhimuriurn Bacteriophage SPN1S. J Virol 2012; 86:1284–1285. PubMed

  100. 100.

    Young ND, Jex AR, Li B, Liu S, Yang L, Xiong Z, Li Y, Cantacessi C, Hall RS, Xu X, et al. Whole-genome sequence of Schistosoma haematobium. Nat Genet 2012, advance online publication.

  101. 101.

    Protasio AV, Tsai IJ, Babbage A, Nichol S, Hunt M, Aslett MA, De Silva N, Velarde GS, Anderson TJC, Clark RC, et al. A systematically improved high quality genome and transcriptome of the human blood fluke Schistosoma mansoni. PLoS Negl Trop Dis 2012; 6:e1455. PubMed

  102. 102.

    Li H, Liu H, Shi A, Štys P, Zhou X, Cai W. The complete mitochondrial genome and novel gene arrangement of the unique-headed bug stenopirates sp. (Hemiptera: Enicocephalidae). PLoS ONE 2012; 7:e29419. PubMed

  103. 103.

    Kim JH, Son JS, Choresca CH, Shin SP, Han JE, Jun JW, Kang DH, Oh C, Heo SJ, Park SC. Complete Genome Sequence of Bacteriophage phiAS7, a T7-Like Virus That Infects Aeromonas salmonicida subsp. salmonicida. J Virol 2012; 86:2894–2895. PubMed

  104. 104.

    Khemayan K, Prachumwat A, Sonthayanon B, Intaraprasong A, Sriurairatana S, Flegel TW. The complete genome sequence of a virulence-enhancing siphophage VHS1 from Vibrio harveyi. Appl Environ Microbiol 2012. PubMed

  105. 105.

    Keller A, Graefen A, Ball M, Matzas M, Boisguerin V, Maixner F, Leidinger P, Backes C, Khairat R, Forster M, et al. New insights into the Tyrolean Iceman’s origin and phenotype as inferred by whole-genome sequencing. Nature Communications 2012; 3:698.

Download references

Author information



Corresponding author

Correspondence to Oranmiyan W. Nelson.

Rights and permissions

This article is published under license to BioMed Central Ltd. This is an Open Access article distributed under the terms of the Creative Commons Attribution License (, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly credited. The Creative Commons Public Domain Dedication waiver ( applies to the data made available in this article, unless otherwise stated.

Reprints and Permissions

About this article

Cite this article

Nelson, O.W., Garrity, G.M. Genome sequences published outside of Standards in Genomic Sciences, January–March 2012. Stand in Genomic Sci 6, 126–135 (2012).

Download citation