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Table 3 Genome statistics of Halopiger salifodinae KCY07-B2T, including nucleotide content and gene count levels

From: Draft genome sequence of Halopiger salifodinae KCY07-B2T, an extremly halophilic archaeon isolated from a salt mine

Attribute

Value

% of totala

Genome size (bp)

4,350,718

100.00

DNA coding (bp)

3,567,421

82.00

DNA G + C (bp)

2,845,805

65.41

DNA scaffolds

81

 

Total genes

4254

100.00

Protein coding genes

4204

98.82

RNA genes

50

1.18

Pseudo genes

not determined

not determined

Genes in internal clusters

not determined

not determined

Genes with function prediction

2561

60.20

Genes assigned to COGs

2887

67.87

Genes assigned Pfam domains

2694

63.33

Genes with signal peptides

122

2.9

Genes with transmembrane helices

910

21.39

CRISPR repeats

3

0.07

  1. aThe total is based on either the size of the genome in base pairs or the total number of protein coding genes in the annotated genome