Table 5. Output format of the JCVI prokaryotic metagenomics functional annotation multi fasta file header, with example entries.
From: The JCVI standard operating procedure for annotating prokaryotic metagenomic shotgun sequencing data
Column Header | Example Entry |
|---|---|
User Id | GCA1659448.b1 |
Peptide Id | JCVI PEP 5160785.1 |
Common Name Section Starts | common name |
Common Name | glutamine synthetase, catalytic domain |
Common Name Evidence | PF00120 |
Gene Symbol Section Starts | gene symbol |
Gene Symbol | glnT |
Gene Symbol Evidence | RF|YP 266724.1|71084004|NC 007205 |
GO Section Starts | GO |
GO Terms | GO:0004356 // GO:0006542 |
GO Term Evidence | PF00120 // PF00120 |
EC Section Starts | EC |
EC Id | 6.3.1.2 |
EC evidence | PF00120 |
TIGR Role Section starts | TIGR role |
Tigr Role Id | 73 |
Tigr Role Evidence | PF00120 |