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Table 6. Percentage of genes associated with the 25 general COG functional categories for B. neonati and B. intestinalis DSM 20548.

From: Non-contiguous finished genome sequence and description of Bacteroides neonati sp. nov., a new species of anaerobic bacterium

Code B. neonati %agea B. intestinalis%agea % Difference COG description
J 4.73 4.26 0.47 Translation, ribosomal structure and biogenesis
A 0.31 0.24 0.07 RNA processing and modification
K 5.89 5.63 0.26 Transcription
L 6.58 6.21 0.37 Replication, recombination and repair
B 0.21 0.21 0 Chromatin structure and dynamics
D 1.77 1.49 0.28 Cell cycle control, cell division, chromosome partitioning
Y 0.06 0.02 0.04 Nuclear structure
V 1.89 2.46 −0.57 Defense mechanisms
T 3.97 4.68 −0.71 Signal transduction mechanisms
M 6.66 7.46 −0.8 Cell wall/membrane biogenesis
N 0.73 1.11 −0.38 Cell motility
Z 0.23 0.12 0.11 Cytoskeleton
W 0 0.02 −0.02 Extracellular structures
U 2.84 2.94 −0.1 Intracellular trafficking and secretion, and vesicular transport
O 3.93 3.45 0.48 Posttranslational modification. protein turnover, chaperones
C 5.69 4.58 1.11 Energy production and conversion
G 6.49 8.77 −2.28 Carbohydrate transport and metabolism
E 6.31 5.53 0.78 Amino acid transport and metabolism
F 2.21 1.97 0.24 Nucleotide transport and metabolism
H 4.2 4.09 0.11 Coenzyme transport and metabolism
I 2.35 2.2 0.15 Lipid transport and metabolism
P 7.06 6.21 0.85 Inorganic ion transport and metabolism
Q 1.39 1.37 0.02 Secondary metabolites biosynthesis, transport and catabolism
R 11.93 12.62 −0.69 General function prediction only
S 10.21 10 0.21 Function unknown
- 2.35 2.33 0.02 Not in COGs
  1. aThe total is based on the total number of protein coding genes in the annotated genome.