Skip to main content

Advertisement

Table 1. Classification and general features of Burkholderia phymatum STM815 according to MIGS recommendations [15]

From: Complete Genome sequence of Burkholderia phymatum STM815T, a broad host range and efficient nitrogen-fixing symbiont of Mimosa species

MIGS ID Property Term Evidence codea
  Current classification Domain Bacteria TAS [16]
  Phylum Proteobacteria TAS [17]
  Class Betaproteobacteria TAS [18,19]
  Order Burkholderiales TAS [18,20]
  Family Burkholderiaceae TAS [18,21]
  Genus Burkholderia TAS [2224]
  Species Burkholderia phymatum TAS [8,25]
  Type strain STM815  
  Gram stain negative TAS [8]
  Cell shape straight rods TAS [8]
  Motility motile  
  Sporulation non-sporulating TAS [8]
  Temperature range mesophile, no growth at 42°C TAS [8]
  Optimum temperature 28°C TAS [8]
  Carbon source D-glucose, L-arabinose, D-mannose, D-mannitol, TAS [8]
  N-acteyl-D-glucosamine, TAS [8]
  D-gluconate, caprate, D-galactose, citric acid, IDA
  D-galacturonate acid, IDA
  methyl-pyruvate, L-aspartic acid, L-glutamic acid, IDA
  L-asparagine, D,L-lactic acid IDA
  Energy source chemoorganotroph TAS [8]
MIGS-6 Habitat Soil, nodule, host TAS [1]
MIGS-6.3 Salinity Not reported  
MIGS-22 Oxygen Aerobic TAS [8]
MIGS-15 Biotic relationship Free living, Symbiotic TAS [1,9]
MIGS-14 Pathogenicity None  
MIGS-4 Geographic location Root nodule of Machaerium lunatum in French Guiana (Paracou) TAS [1]
MIGS-5 Sample collection time 2000 TAS [1]
MIGS-4.1 Latitude 5°15′N TAS [1]
MIGS-4.2 Longitude 52°55′W TAS [1]
MIGS-4.3 Depth Not reported  
MIGS-4.4 Altitude 32 m TAS [1]
  1. a) Evidence codes - IDA: Inferred from Direct Assay; TAS: Traceable Author Statement (i.e., a direct report exists in the literature); NAS: Non-traceable Author Statement (i.e., not directly observed for the living, isolated sample, but based on a generally accepted property for the species, or anecdotal evidence). These evidence codes are from the Gene Ontology project [26].