Table 4. Number of genes associated with the 25 general COG functional categories
Code | Value | %agea | Description |
|---|---|---|---|
J | 159 | 4.06 | Translation |
A | 1 | 0.025 | RNA processing and modification |
K | 287 | 7.33 | Transcription |
L | 141 | 10.58 | Replication, recombination and repair |
B | 1 | 0.025 | Chromatin structure and dynamics |
D | 38 | 0.97 | Cell cycle control, mitosis and meiosis |
Y | 0 | 0.00 | Nuclear structure |
V | 50 | 1.27 | Defense mechanisms |
T | 167 | 4.26 | Signal transduction mechanisms |
M | 196 | 5.01 | Cell wall/membrane biogenesis |
N | 63 | 1.61 | Cell motility |
Z | 0 | 0 | Cytoskeleton |
W | 0 | 0 | Extracellular structures |
U | 54 | 1.38 | Intracellular trafficking and secretion |
O | 98 | 2.5 | Posttranslational modification, protein turnover, chaperones |
C | 181 | 4.62 | Energy production and conversion |
G | 270 | 6.9 | Carbohydrate transport and metabolism |
E | 313 | 8 | Amino acid transport and metabolism |
F | 98 | 2.5 | Nucleotide transport and metabolism |
H | 145 | 3.7 | Coenzyme transport and metabolism |
I | 169 | 4.32 | Lipid transport and metabolism |
P | 167 | 4.26 | Inorganic ion transport and metabolism |
Q | 163 | 4.16 | Secondary metabolites biosynthesis, transport and catabolism |
R | 426 | 10.88 | General function prediction only |
S | 319 | 8.15 | Function unknown |
- | 406 | 10.37 | Not in COGs |