Table 3. Genome sequencing project information of DSM 574 and DSM 14880.
MIGS ID | Property | Term (for DSM 574) | Term (for DSM 14880) |
|---|---|---|---|
MIGS-31 | Finishing quality | Permanent draft | Finished |
MIGS-28 | Libraries used | Three genomic libraries: 454 standard library, 454 PE libraries (7kb insert size), one Illumina library | Four genomic libraries: one 454 pyrosequence standard library, two 454 PE libraries (4kb and 11 kb insert size), one Illumina library |
MIGS-29 | Sequencing platforms | Illumina GAii, 454 GS FLX Titanium | Illumina GAii, 454 GS FLX Titanium |
MIGS-31.2 | Fold coverage | 462.8 × Illumina; 35.2 × pyrosequence | 116.8 × Illumina; 50.6 × pyrosequence |
MIGS-30 | Assemblers | Newbler version 2.3-PreRelease-June 30,2009, VELVET version 1.0.13, phrap version SPS - 4.24 | Newbler version 2.3-PreRelease-June 30, 2009, VELVET version 1.0.13, phrap version SPS - 4.24 |
MIGS-32 | Gene calling method | Prodigal 1.4, GenePRIMP | Prodigal 1.4, GenePRIMP |
INSDC ID | AEVP00000000 | CP002736.1 | |
Genome Database release | December 10, 2010 | August 13, 2012 | |
Genbank Date of Release | February 17, 2011 | May 23, 2011 | |
MIGS-13 | GOLD ID | Gi03933 | Gc01783 |
NCBI project ID | 46699 | 50757 | |
Source material identifier | DSM 574T | DSM 14880T | |
Project relevance | Obtain insight into the phylogenetic and physiological diversity of Desulfotomacum species. | Obtain insight into the phylogenetic and physiological diversity of Desulfotomacum species, and hydrogenogenic CO conversion. |