Table 3. Genome Statistics
Attribute | Number | % of Total |
|---|---|---|
Genome size (bp) | 3,690,113 | 100.00 |
DNA coding region (bp) | 3,376,611 | 91.50 |
DNA G+C content (bp) | 2,222,524 | 60.23 |
Number of scaffolds | 17 | |
Extrachromosomal elements | 1 | |
Total genes | 3,657 | 100.00 |
RNA genes | 56 | 1.53 |
rRNA operons | 1 | |
tRNA genes | 43 | 1.18 |
Protein-coding genes | 3,601 | 98.47 |
Genes with function prediction (proteins) | 2,990 | 81.76 |
Genes in paralog clusters | 1,040 | 28.44 |
Genes assigned to COGs | 2,873 | 78.56 |
Genes assigned Pfam domains | 3,047 | 83.32 |
Genes with signal peptides | 347 | 9.49 |
Genes with transmembrane helices | 836 | 22.86 |
CRISPR repeats | 0 |