Skip to main content
Figure 1. | Standards in Genomic Sciences

Figure 1.

From: Thermus oshimai JL-2 and T. thermophilus JL-18 genome analysis illuminates pathways for carbon, nitrogen, and sulfur cycling

Figure 1.

Phylogenomic tree highlighting the position of Thermus oshimai JL-2 and Thermus thermophilus JL-18. Thirty-one bacterial phylogenetic markers were identified using Amphora [10]. Maximum-likelihood analysis was carried out with a concatenated alignment of all 31 proteins using RAxML Version 7.2.6 [11] and the tree was visualized using iTOL [12]. Red circles indicate bootstrap support >80% (100 replicates). Scale bar indicates 0.1 substitutions per position. The protein FASTA files for all the species are from NCBI, except for the following species, which are from IMG: Thermus igniterrae ATCC 700962 (Taxon OID: 2515935625), Thermus oshimai DSM 12092 (Taxon OID: 2515463139), Thermus oshimai JL-2 (Taxon OID: 2508706991), Thermus sp. RLM (Taxon OID: 2514335427).

Back to article page

Environmental Microbiome

ISSN: 2524-6372