Table 4. Number of genes associated with the general COG functional categories
From: Complete genome sequence of Halorhabdus utahensis type strain (AX-2T)
Code | Value | % age | Description |
|---|---|---|---|
J | 157 | 5.2 | Translation, ribosomal structure and biogenesis |
A | 1 | 0.0 | RNA processing and modification |
K | 120 | 3.9 | Transcription |
L | 115 | 3.8 | Replication, recombination and repair |
B | 3 | 0.0 | Chromatin structure and dynamics |
D | 26 | 0.8 | Cell cycle control, mitosis and meiosis |
Y | 0 | 0.0 | Nuclear structure |
V | 41 | 1.3 | Defense mechanisms |
T | 121 | 4.0 | Signal transduction mechanisms |
M | 82 | 2.7 | Cell wall/membrane biogenesis |
N | 33 | 1.0 | Cell motility |
Z | 0 | 0.0 | Cytoskeleton |
W | 0 | 0.0 | Extracellular structures |
U | 25 | 0.8 | Intracellular trafficking and secretion |
O | 95 | 3.1 | Posttranslational modification, protein turnover, chaperones |
C | 147 | 4.8 | Energy production and conversion |
G | 107 | 3.5 | Carbohydrate transport and metabolism |
E | 165 | 5.4 | Amino acid transport and metabolism |
F | 65 | 2.1 | Nucleotide transport and metabolism |
H | 106 | 3.5 | Coenzyme transport and metabolism |
I | 42 | 1.4 | Lipid transport and metabolism |
P | 122 | 4.0 | Inorganic ion transport and metabolism |
Q | 24 | 0.8 | Secondary metabolites biosynthesis, transport and catabolism |
R | 0 | 10.9 | General function prediction only |
S | 214 | 7.1 | Function unknown |
- | 1,081 | 35.7 | Not in COGs |