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Table 3. Genome Statistics

From: Genome sequence of the thermophilic fresh-water bacterium Spirochaeta caldaria type strain (H1T), reclassification of Spirochaeta caldaria, Spirochaeta stenostrepta and Spirochaeta zuelzerae in the genus Treponema as Treponema caldaria comb. nov., Treponema stenostrepta comb. nov., and Treponema zuelzerae comb. nov., and emendation of the genus Treponema

Attribute

Value

% of Total

Genome size (bp)

3,239,340

100.00%

DNA coding region (bp)

2,965,950

91.56%

DNA G+C content (bp)

1,476,358

45.58%

Number of replicons

1

 

Extrachromosomal elements

0

 

Total genes

2,928

100.00%

RNA genes

59

2.02%

rRNA operons

3

 

Protein-coding genes

2,869

97.98%

Pseudo genes

80

2.73%

Genes with function prediction

2,078

70.97%

Genes in paralog clusters

1,319

45.05%

Genes assigned to COGs

2,270

77.53%

Genes assigned Pfam domains

2,260

77.19%

Genes with signal peptides

527

18.00%

Genes with transmembrane helices

762

26.02%

CRISPR repeats

0

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