Table 4. Number of genes associated with the 25 general COG functional categories
From: Complete genome sequence of bacteriophage VvAW1, which infects Vibrio vulnificus
Code | Value | % agea | Description |
|---|---|---|---|
J | 0 | 0 | Translation |
A | 0 | 0 | RNA processing and modification |
K | 2 | 5 | Transcription |
L | 3 | 7.5 | Replication, recombination and repair |
B | 0 | 0 | Chromatin structure and dynamics |
D | 0 | 0 | Cell cycle control, mitosis and meiosis |
Y | 0 | 0 | Nuclear structure |
V | 0 | 0 | Defense mechanisms |
T | 2 | 5 | Signal transduction mechanisms |
M | 1 | 2.5 | Cell wall/membrane biogenesis |
N | 1 | 2.5 | Cell motility |
Z | 0 | 0 | Cytoskeleton |
W | 0 | 0 | Extracellular structures |
U | 0 | 0 | Intracellular trafficking and secretion |
O | 0 | 0 | Posttranslational modification, protein turnover, chaperones |
C | 1 | 2.5 | Energy production and conversion |
G | 0 | 0 | Carbohydrate transport and metabolism |
E | 0 | 0 | Amino acid transport and metabolism |
F | 0 | 0 | Nucleotide transport and metabolism |
H | 0 | 0 | Coenzyme transport and metabolism |
I | 0 | 0 | Lipid transport and metabolism |
P | 0 | 0 | Inorganic ion transport and metabolism |
Q | 0 | 0 | Secondary metabolites biosynthesis, transport and catabolism |
R | 1 | 2.5 | General function prediction only |
S | 3 | 7.5 | Function unknown |
- | 28 | 70 | Not in COGs |