Figure 2.
From: Complete genome sequence of bacteriophage VvAW1, which infects Vibrio vulnificus
Unrooted maximum likelihood tree highlighting the position of Vibriophage VvAW1 relative to its most similar homologs by BLAST search (E-value > 10e-5). All of the phages in the tree are classified as podoviruses, with the exception of phiSG1 and APSE-2 prophage, which are unclassified. The phages and the corresponding GenBank accession numbers for their capsid protein genes are: EBPR podovirus AEI70875; Xyella phage Xfas53, YP_003344924; Thalassomonas phage Ba3, YP_001552282; Sodalis phage phSG1, YP_516191; APSE-2 prophage, YP_002924439; and Enterobacteria phage HK620, NP_112079. These sequences were aligned using the MAFFT alignment program, version 6.814b, using auto settings; and the maximum likelihood tree was built using PHYML with a Whelan and Goldman substitution model, and was bootstrapped 10,000 times using the Geneious software package v 5.5.7 [14].