Table 3. Genome Statistics
From: Permanent draft genome sequence of the gliding predator Saprospira grandis strain Sa g1 (= HR1)
Attribute | Value | % of Total |
|---|---|---|
Genome size (bp) | 4,495,250 | 100.00% |
DNA coding region (bp) | 3,693,336 | 82.16% |
DNA G+C content (bp) | 2,067,067 | 46.06% |
Number of scaffolds | 5* | |
Extrachromosomal elements | 1 | |
Total genes | 3,598 | 100.00% |
RNA genes | 62 | 1.72% |
rRNA operons | 3** | |
tRNA genes | 48 | 1.33% |
Protein-coding genes | 3,536 | 98.28% |
Pseudo genes | 70 | 1.95% |
Genes with function prediction (proteins) | 2,064 | 57.37% |
Genes in paralog clusters | 1,575 | 43.77% |
Genes assigned to COGs | 2,064 | 57.37% |
Genes assigned Pfam domains | 2,072 | 57.59% |
Genes with signal peptides | 1,109 | 30.82% |
Genes with transmembrane helices | 687 | 19.09% |
CRISPR repeats | 5 |