Table 5. Genome statistics comparison among Arthrospira spp.
From: Draft genome sequence of Arthrospira platensis C1 (PCC9438)
Genome Name | A. platensis C1 | A. platensis NIES-39 | A. maxima CS-328 | A. platensis Paraca | A. platensis |
|---|---|---|---|---|---|
Genome size (bp) | 6,089,210 | 6,788,435 | 6,003,314 | 4,997,563 | 6,145,553 |
Total genes | 6,153 | 6,676 | 5,730 | 5,401 | 5,718 |
Protein coding genes | 6,108 | 6,630 | 5,690 | 5,370 | 5,675 |
Protein with function prediction | 3,757 | 2,542 | 3,315 | 3,023 | 3,023 |
RNA genes | 45 | 46 | 40 | 31 | 43 |
Enzymes | 952 | 905 | 889 | 816 | 882 |
% Enzymes | 15.47% | 13.56% | 15.51% | 15.11% | 15.42% |
Transporter Classification | 345 | NA | NA | NA | NA |
% Transporter Classification | 5.61% | NA | NA | NA | NA |
KEGG pathways | 1,012 | 993 | 931 | 904 | 954 |
% KEGG pathways | 16.45% | 14.87% | 16.25% | 16.74% | 16.68% |
KEGG Orthology (KO) | 1,837 | 1,702 | 1,623 | 1,492 | 1,658 |
% KEGG Orthology (KO) | 29.86% | 25.49% | 28.32% | 27.62% | 29.00% |
COGs | 3,459 | 3,570 | 3,306 | 3,050 | 3,234 |
% COGs | 56.22% | 53.48% | 57.70% | 56.47% | 56.56% |
Pfam | 3,529 | 3,598 | 3,564 | 3,431 | 3,526 |
% Pfam | 57.35% | 53.89% | 62.20% | 63.53% | 61.66% |
TIGRfam | 1,180 | 1,213 | 1,160 | 1,185 | 1,203 |
% TIGRfam | 19.18% | 18.17% | 20.24% | 21.94% | 21.04% |
InterPro | 4,244 | 3,969 | 3,938 | 4,207 | 4,294 |
% InterPro | 68.97% | 59.45% | 68.73% | 77.89% | 75.10% |
Signal peptides | 570 | 1,319 | 545 | 559 | 1,150 |
% signal peptides | 9.26% | 19.76% | 9.51% | 10.35% | 20.11% |
Transmembrane proteins | 1,094 | 1,123 | 1,053 | 1,094 | 1,057 |
% Transmembrane proteins | 17.78% | 16.82% | 18.38% | 20.26% | 18.49% |
COG clusters | 1,569 | 1,566 | 1,491 | 1,489 | 1,472 |
KOG clusters | 729 | 723 | 722 | 737 | 717 |
Pfam clusters | 1,740 | 1,732 | 1,702 | 1,729 | 1,730 |
TIGRfam clusters | 932 | 936 | 902 | 924 | 931 |