Table 5. Number of genes associated with the 25 general COG functional categories
From: Complete genome sequence of Halopiger xanaduensis type strain (SH-6T)
Code | Value | %agea | Description |
|---|---|---|---|
J | 172 | 4.0% | Translation |
A | 1 | 0.0% | RNA processing and modification |
K | 184 | 4.3% | Transcription |
L | 134 | 3.1% | Replication, recombination and repair |
B | 4 | 0.1% | Chromatin structure and dynamics |
D | 30 | 0.7% | Cell cycle control, mitosis and meiosis |
Y | 0 | 0.0% | Nuclear structure |
V | 47 | 1.1% | Defense mechanisms |
T | 153 | 3.5% | Signal transduction mechanisms |
M | 120 | 2.8% | Cell wall/membrane biogenesis |
N | 46 | 1.1% | Cell motility |
Z | 0 | 0.0% | Cytoskeleton |
W | 0 | 0.0% | Extracellular structures |
U | 31 | 0.7% | Intracellular trafficking and secretion |
O | 137 | 3.2% | Posttranslational modification, protein turnover, chaperones |
C | 194 | 4.5% | Energy production and conversion |
G | 194 | 4.5% | Carbohydrate transport and metabolism |
E | 259 | 6.0% | Amino acid transport and metabolism |
F | 79 | 1.8% | Nucleotide transport and metabolism |
H | 158 | 3.7% | Coenzyme transport and metabolism |
I | 80 | 1.9% | Lipid transport and metabolism |
P | 227 | 5.3% | Inorganic ion transport and metabolism |
Q | 44 | 1.0% | Secondary metabolites biosynthesis, transport and catabolism |
R | 554 | 12.9% | General function prediction only |
S | 314 | 7.3% | Function unknown |
- | 1433 | 33.2% | Not in COGs |