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Table 5. Number of genes associated with the 25 general COG functional categories

From: Complete genome sequence of Halopiger xanaduensis type strain (SH-6T)

Code Value %agea Description
J 172 4.0% Translation
A 1 0.0% RNA processing and modification
K 184 4.3% Transcription
L 134 3.1% Replication, recombination and repair
B 4 0.1% Chromatin structure and dynamics
D 30 0.7% Cell cycle control, mitosis and meiosis
Y 0 0.0% Nuclear structure
V 47 1.1% Defense mechanisms
T 153 3.5% Signal transduction mechanisms
M 120 2.8% Cell wall/membrane biogenesis
N 46 1.1% Cell motility
Z 0 0.0% Cytoskeleton
W 0 0.0% Extracellular structures
U 31 0.7% Intracellular trafficking and secretion
O 137 3.2% Posttranslational modification, protein turnover, chaperones
C 194 4.5% Energy production and conversion
G 194 4.5% Carbohydrate transport and metabolism
E 259 6.0% Amino acid transport and metabolism
F 79 1.8% Nucleotide transport and metabolism
H 158 3.7% Coenzyme transport and metabolism
I 80 1.9% Lipid transport and metabolism
P 227 5.3% Inorganic ion transport and metabolism
Q 44 1.0% Secondary metabolites biosynthesis, transport and catabolism
R 554 12.9% General function prediction only
S 314 7.3% Function unknown
- 1433 33.2% Not in COGs
  1. a) The total is based on the total number of protein coding genes in the annotated genome.