Table 2. Genome sequencing project information
From: Complete genome sequence of the aquatic bacterium Runella slithyformis type strain (LSU 4T)
MIGS ID | Property | Term |
|---|---|---|
MIGS-31 | Finishing quality | Finished |
MIGS-28 | Libraries used | Four genomic libraries: one 454 pyrosequence standard library, two 454 PE libraries (2 kb and 11 kb insert sizes), one Illumina library |
MIGS-29 | Sequencing platforms | Illumina GAii, 454 GS FLX Titanium |
MIGS-31.2 | Sequencing coverage | 100.4 Ă— Illumina; 28.2 Ă— pyrosequence |
MIGS-30 | Assemblers | Newbler version 2.3, Velvet 0.7.63, phrap version SPS - 4.24 |
MIGS-32 | Gene calling method | Prodigal 1.4, GenePRIMP |
| Â | INSDC ID | CP002859 (chromosome) |
| Â | Â | CP002860-64 (plasmids RUNSL01-05) |
| Â | Genbank Date of Release | August 16, 2011 |
| Â | GOLD ID | Gc01829 |
| Â | NCBI project ID | 49125 |
| Â | Database: IMG-GEBA | 2505679030 |
MIGS-13 | Source material identifier | DSM 19594 |
| Â | Project relevance | Tree of Life, GEBA |