Table 4. Number of genes associated with the general COG functional categories
From: Complete genome sequence of Allochromatium vinosum DSM 180T
Code | Value | %age | Description |
|---|---|---|---|
J | 160 | 5.70 | Translation, ribosomal structure and biogenesis |
A | 1 | 0.04 | RNA processing and modification |
K | 106 | 3.78 | Transcription |
L | 145 | 5.17 | Replication, recombination and repair |
B | 1 | 0.04 | Chromatin structure and dynamics |
D | 51 | 1.82 | Cell cycle control, cell division, chromosome partitioning |
Y | 0 | 0.00 | Nuclear structure |
V | 49 | 1.75 | Defense mechanisms |
T | 303 | 10.80 | Signal transduction mechanisms |
M | 198 | 7.06 | Cell wall/membrane biogenesis |
N | 1,135 | 4.81 | Cell motility |
Z | 0 | 0.0 | Cytoskeleton |
W | 0 | 0.0 | Extracellular structures |
U | 84 | 2.99 | Intracellular trafficking and secretion |
O | 126 | 4.49 | Posttranslational modification, protein turnover, chaperones |
C | 224 | 7.98 | Energy production and conversion |
G | 101 | 3.60 | Carbohydrate transport and metabolism |
E | 148 | 5.27 | Amino acid transport and metabolism |
F | 54 | 1.92 | Nucleotide transport and metabolism |
H | 159 | 5.67 | Coenzyme transport and metabolism |
I | 63 | 2.25 | Lipid transport and metabolism |
P | 172 | 6.13 | Inorganic ion transport and metabolism |
Q | 41 | 1.46 | Secondary metabolites biosynthesis, transport and catabolism |
R | 261 | 9.30 | General function prediction only |
S | 224 | 7.98 | Function unknown |
- | 861 | 25.58 | Not in COGs |