Table 3. Genome Statistics
From: Complete genome sequence of Pedobacter heparinus type strain (HIM 762-3T)
Attribute | Value | % of Total |
|---|---|---|
Genome size (bp) | 5,167,383 | 100.00% |
DNA Coding region (bp) | 4,829,823 | 93.47% |
DNA G+C content (bp) | 2,172,827 | 42.05% |
Number of replicons | 1 | |
Extrachromosomal elements | 0 | |
Total genes | 4341 | 100.00% |
RNA genes | 54 | 1.22% |
rRNA operons | 3 | |
Protein-coding genes | 4287 | 98.69% |
Pseudo genes | 35 | 0.81% |
Genes with function prediction | 2911 | 67.05% |
Genes in paralog clusters | 899 | 20.70% |
Genes assigned to COGs | 2806 | 64.59% |
Genes assigned Pfam domains | 2991 | 68.85% |
Genes with signal peptides | 1425 | 32.80% |
Genes with transmembrane helices | 1051 | 24.19% |
CRISPR repeats | 0 | 0.00% |