Skip to main content

Table 4. Number of genes associated with the 25 general COG functional categories

From: Draft genome sequence of strain HIMB100, a cultured representative of the SAR116 clade of marine Alphaproteobacteria

Code Value %agea Description
J 142 6.8 Translation
A 0 0 RNA processing and modification
K 77 3.7 Transcription
L 93 4.5 Replication, recombination and repair
B 2 0.1 Chromatin structure and dynamics
D 20 1.0 Cell cycle control, mitosis and meiosis
Y 0 0 Nuclear structure
V 16 0.8 Defense mechanisms
T 41 2.0 Signal transduction mechanisms
M 142 6.8 Cell wall/membrane biogenesis
N 41 2.0 Cell motility
Z 0 0 Cytoskeleton
W 0 0 Extracellular structures
U 40 1.9 Intracellular trafficking and secretion
O 89 4.3 Posttranslational modification, protein turnover, chaperones
C 149 7.1 Energy production and conversion
G 126 6.0 Carbohydrate transport and metabolism
E 250 12.0 Amino acid transport and metabolism
F 58 2.8 Nucleotide transport and metabolism
H 117 5.6 Coenzyme transport and metabolism
I 113 5.4 Lipid transport and metabolism
P 70 3.4 Inorganic ion transport and metabolism
Q 78 3.7 Secondary metabolites biosynthesis, transport and catabolism
R 271 13.0 General function prediction only
S 155 7.4 Function unknown
- 503 21.2 Not in COGs
  1. a) The total is based on the total number of protein coding genes in the annotated genome.