Table 4. Number of genes associated with the general COG functional categories
From: Complete genome sequence of the extremely halophilic Halanaerobium praevalens type strain (GSLT)
Code | value | %age | Description |
|---|---|---|---|
J | 133 | 6.9 | Translation, ribosomal structure and biogenesis |
A | 0 | 0.0 | RNA processing and modification |
K | 124 | 6.4 | Transcription |
L | 115 | 6.0 | Replication, recombination and repair |
B | 1 | 0.0 | Chromatin structure and dynamics |
D | 24 | 1.2 | Cell cycle control, cell division, chromosome partitioning |
Y | 0 | 0.0 | Nuclear structure |
V | 18 | 0.9 | Defense mechanisms |
T | 126 | 6.5 | Signal transduction mechanisms |
M | 106 | 5.5 | Cell wall/membrane/envelope biogenesis |
N | 76 | 3.9 | Cell motility |
Z | 0 | 0.0 | Cytoskeleton |
W | 0 | 0.0 | Extracellular structures |
U | 44 | 2.3 | Intracellular trafficking, secretion, and vesicular transport |
O | 66 | 3.4 | Posttranslational modification, protein turnover, chaperones |
C | 123 | 6.4 | Energy production and conversion |
G | 150 | 7.8 | Carbohydrate transport and metabolism |
E | 136 | 7.0 | Amino acid transport and metabolism |
F | 74 | 3.8 | Nucleotide transport and metabolism |
H | 80 | 4.1 | Coenzyme transport and metabolism |
I | 45 | 2.3 | Lipid transport and metabolism |
P | 121 | 6.3 | Inorganic ion transport and metabolism |
Q | 18 | 0.9 | Secondary metabolites biosynthesis, transport and catabolism |
R | 186 | 9.6 | General function prediction only |
S | 168 | 8.7 | Function unknown |
- | 420 | 19.3 | Not in COGs |