Table 4. Number of genes associated with the general COG functional categories
From: Complete genome sequence of the thermophilic sulfur-reducer Hippea maritima type strain (MH2T)
Code | value | % age | Description |
|---|---|---|---|
J | 133 | 8.5 | Translation, ribosomal structure and biogenesis |
A | 0 | 0.0 | RNA processing and modification |
K | 45 | 2.9 | Transcription |
L | 119 | 7.6 | Replication, recombination and repair |
B | 0 | 0.0 | Chromatin structure and dynamics |
D | 19 | 1.2 | Cell cycle control, cell division, chromosome partitioning |
Y | 0 | 0.0 | Nuclear structure |
V | 11 | 0.7 | Defense mechanisms |
T | 78 | 5.0 | Signal transduction mechanisms |
M | 110 | 7.1 | Cell wall/membrane/envelope biogenesis |
N | 69 | 4.4 | Cell motility |
Z | 0 | 0.0 | Cytoskeleton |
W | 0 | 0.0 | Extracellular structures |
U | 59 | 3.8 | Intracellular trafficking, secretion, and vesicular transport |
O | 68 | 4.4 | Posttranslational modification, protein turnover, chaperones |
C | 107 | 6.9 | Energy production and conversion |
G | 62 | 4.0 | Carbohydrate transport and metabolism |
E | 147 | 9.4 | Amino acid transport and metabolism |
F | 46 | 3.0 | Nucleotide transport and metabolism |
H | 108 | 6.9 | Coenzyme transport and metabolism |
I | 52 | 3.3 | Lipid transport and metabolism |
P | 66 | 4.2 | Inorganic ion transport and metabolism |
Q | 22 | 1.4 | Secondary metabolites biosynthesis, transport and catabolism |
R | 146 | 9.4 | General function prediction only |
S | 93 | 6.0 | Function unknown |
- | 366 | 20.6 | Not in COGs |