Table 4. Number of genes associated with the general COG functional categories
From: Complete genome sequence of Desulfurococcus mucosus type strain (O7/1T)
Code | value | %age | Description |
|---|---|---|---|
J | 148 | 13.9 | Translation, ribosomal structure and biogenesis |
A | 2 | 0.2 | RNA processing and modification |
K | 50 | 4.7 | Transcription |
L | 62 | 5.8 | Replication, recombination and repair |
B | 1 | 0.1 | Chromatin structure and dynamics |
D | 7 | 0.7 | Cell cycle control, cell division, chromosome partitioning |
Y | 0 | 0.0 | Nuclear structure |
V | 10 | 0.9 | Defense mechanisms |
T | 14 | 1.3 | Signal transduction mechanisms |
M | 37 | 3.5 | Cell wall/membrane/envelope biogenesis |
N | 4 | 0.4 | Cell motility |
Z | 0 | 0.0 | Cytoskeleton |
W | 0 | 0.0 | Extracellular structures |
U | 10 | 0.9 | Intracellular trafficking, secretion, and vesicular transport |
O | 45 | 4.2 | Posttranslational modification, protein turnover, chaperones |
C | 97 | 9.1 | Energy production and conversion |
G | 52 | 4.9 | Carbohydrate transport and metabolism |
E | 77 | 7.2 | Amino acid transport and metabolism |
F | 39 | 3.7 | Nucleotide transport and metabolism |
H | 45 | 4.2 | Coenzyme transport and metabolism |
I | 14 | 1.3 | Lipid transport and metabolism |
P | 81 | 7.6 | Inorganic ion transport and metabolism |
Q | 3 | 0.3 | Secondary metabolites biosynthesis, transport and catabolism |
R | 170 | 16.0 | General function prediction only |
S | 96 | 9.0 | Function unknown |
- | 420 | 29.6 | Not in COGs |