Table 4. Number of genes associated with the general COG functional categories
From: Complete genome sequence of Deinococcus maricopensis type strain (LB-34T)
Code | value | %age | Description |
|---|---|---|---|
J | 160 | 6.0 | Translation, ribosomal structure and biogenesis |
A | 0 | 0.0 | RNA processing and modification |
K | 188 | 7.1 | Transcription |
L | 109 | 4.1 | Replication, recombination and repair |
B | 2 | 0.1 | Chromatin structure and dynamics |
D | 29 | 1.1 | Cell cycle control, cell division, chromosome partitioning |
Y | 0 | 0.0 | Nuclear structure |
V | 45 | 1.7 | Defense mechanisms |
T | 195 | 7.3 | Signal transduction mechanisms |
M | 137 | 5.2 | Cell wall/membrane/envelope biogenesis |
N | 15 | 0.6 | Cell motility |
Z | 1 | 0.0 | Cytoskeleton |
W | 0 | 0.0 | Extracellular structures |
U | 43 | 1.6 | Intracellular trafficking, secretion, and vesicular transport |
O | 113 | 4.3 | Posttranslational modification, protein turnover, chaperones |
C | 125 | 4.7 | Energy production and conversion |
G | 205 | 7.7 | Carbohydrate transport and metabolism |
E | 237 | 8.9 | Amino acid transport and metabolism |
F | 77 | 2.9 | Nucleotide transport and metabolism |
H | 119 | 4.5 | Coenzyme transport and metabolism |
I | 105 | 4.0 | Lipid transport and metabolism |
P | 121 | 4.6 | Inorganic ion transport and metabolism |
Q | 60 | 2.3 | Secondary metabolites biosynthesis, transport and catabolism |
R | 334 | 12.6 | General function prediction only |
S | 238 | 9.0 | Function unknown |
- | 955 | 28.4 | Not in COGs |