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Table 1. Classification and general features of P. propionicigenes WB4T according to the MIGS recommendations [14].

From: Complete genome sequence of Paludibacter propionicigenes type strain (WB4T)

MIGS ID

Property

Term

Evidence code

 

Current classification

Domain Bacteria

TAS [15]

 

Phylum Bacteroidetes

TAS [16]

 

Class Bacteroidia

TAS [16,17]

 

Order Bacteroidales

TAS [16]

 

Family Porphyromonadaceae

TAS [16]

 

Genus Paludibacter

TAS [2]

 

Species Paludibacter propionicigenes

TAS [2]

 

Type strain WB4

TAS [2]

 

Gram stain

negative

TAS [3]

 

Cell shape

rod-shaped

TAS [3]

 

Motility

non-motile

TAS [2]

 

Sporulation

none

TAS [3]

 

Temperature range

15°C to 35°C

TAS [3]

 

Optimum temperature

30°C

TAS [2]

 

Salinity

normal

NAS

MIGS-22

Oxygen requirement

strictly anaerobic

TAS [3]

 

Carbon source

carbohydrates

TAS [3]

 

Energy source

chemoorganotroph

TAS [3]

MIGS-6

Habitat

soil

TAS [3]

MIGS-15

Biotic relationship

free-living

NAS

MIGS-14

Pathogenicity

none

NAS

 

Biosafety level

1

TAS [18]

 

Isolation

rice plant residue in anoxic rice-field soil

TAS [3]

MIGS-4

Geographic location

Yamagata, Japan

TAS [3]

MIGS-5

Sample collection time

1994

TAS [3]

MIGS-4.1

Latitude

38.25

NAS

MIGS-4.2

Longitude

140.34

NAS

MIGS-4.3

Depth

not reported

 

MIGS-4.4

Altitude

not reported

 
  1. Evidence codes - IDA: Inferred from Direct Assay (first time in publication); TAS: Traceable Author Statement (i.e., a direct report exists in the literature); NAS: Non-traceable Author Statement (i.e., not directly observed for the living, isolated sample, but based on a generally accepted property for the species, or anecdotal evidence). These evidence codes are from of the Gene Ontology project [19]. If the evidence code is IDA, then the property was directly observed by one of the authors or an expert mentioned in the acknowledgements.