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Table 2. HMM annotation hierarchy.*

From: The IGS Standard Operating Procedure for Automated Prokaryotic Annotation

Isology

Rank

Name Modifier

Equivalog

1

None

Equivalog Domain

2

None

Subfamily

3

… family protein

Superfamily

4

… family protein

Subfamily Domain

5

… domain protein

Domain

6

… domain protein

Pfam

7

… family protein

Hypothetical Equivalog

7

None

  1. *In all cases, GO terms and TIGR roles are copied from the HMM.
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Environmental Microbiome

ISSN: 2524-6372