Table 5. Metagenome statistics
Jan 3pm | Jan 7pm | Apr 4pm | Apr 10pm | Aug 27 4pm | Aug 27 10pm | Aug 28 4am | Aug 28 10am | |
|---|---|---|---|---|---|---|---|---|
No. Original DNA Sequences | 616,793 | 784,823 | 637,801 | 493,003 | 620,759 | 524,953 | 500,117 | 326,475 |
Predicted ORFs (>40aa pORFs) | 862,695 | 1,287,412 | 1,003,799 | 745,305 | 986,269 | 846,209 | 779,951 | 491,330 |
No. of pORF clusters (95%) | 615,374 | 1,123,829 | 779,342 | 588,387 | 881,113 | 703,712 | 675,210 | 444,729 |
No. of pORF singletons (95%) | 546,463 | 1,031,865 | 682,586 | 526,233 | 805,284 | 634,042 | 608,785 | 410,616 |
No. of pORF ‘families’ (60%) | 423,674 | 1,031,904 | 678,547 | 528,213 | 801,760 | 637,542 | 620,403 | 419,461 |
No. of pORF singletons (60%) | 352,938 | 962,073 | 609,351 | 486,712 | 740,032 | 589,839 | 577,027 | 398,202 |
Resampled pORFs (66529) | ||||||||
No. of pORF clusters (95%) (66529) | 56337 | 64446 | 61187 | 59904 | 65601 | 63032 | 64729 | 65075 |
No. of pORF singletons (95%) (66529) | 52891 | 63378 | 58691 | 57779 | 64818 | 61068 | 63359 | 63945 |
Good’s Coverage (66529) | 20.50 | 4.74 | 11.78 | 13.15 | 2.57 | 8.21 | 4.76 | 3.88 |
No. DNA seqs with functional annotation | 122,936 | 291,953 | 258,658 | 164,249 | 283,761 | 196,369 | 196,972 | 126,392 |
No. DNA seqs without functional annotation (%) | 493,857 | 492,870 | 379,143 | 328,754 | 336,998 | 328,584 | 303,145 | 200,083 |
Percent DNA seqs without functional annotation | 80% | 63% | 59% | 67% | 54% | 63% | 61% | 61% |
No. DNA seqs with taxonomic annotation | 190,326 | 417,920 | 349,888 | 241,541 | 379,911 | 288,356 | 304,003 | 186,421 |
Resampled sequencing effort (186,421) | ||||||||
Number of archaeal sequences (186,421) | 19,055 | 15,150 | 777 | 561 | 1,370 | 1,093 | 1,585 | 1,244 |
Number of bacterial sequences (186,421) | 161,899 | 146,911 | 182,850 | 180,674 | 182,717 | 176,825 | 180,725 | 182,332 |