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Table 5. Metagenome statistics

From: Metagenomes and metatranscriptomes from the L4 long-term coastal monitoring station in the Western English Channel

  Jan 3pm Jan 7pm Apr 4pm Apr 10pm Aug 27 4pm Aug 27 10pm Aug 28 4am Aug 28 10am
No. Original DNA Sequences 616,793 784,823 637,801 493,003 620,759 524,953 500,117 326,475
Predicted ORFs (>40aa pORFs) 862,695 1,287,412 1,003,799 745,305 986,269 846,209 779,951 491,330
No. of pORF clusters (95%) 615,374 1,123,829 779,342 588,387 881,113 703,712 675,210 444,729
No. of pORF singletons (95%) 546,463 1,031,865 682,586 526,233 805,284 634,042 608,785 410,616
No. of pORF ‘families’ (60%) 423,674 1,031,904 678,547 528,213 801,760 637,542 620,403 419,461
No. of pORF singletons (60%) 352,938 962,073 609,351 486,712 740,032 589,839 577,027 398,202
Resampled pORFs (66529)         
No. of pORF clusters (95%) (66529) 56337 64446 61187 59904 65601 63032 64729 65075
No. of pORF singletons (95%) (66529) 52891 63378 58691 57779 64818 61068 63359 63945
Good’s Coverage (66529) 20.50 4.74 11.78 13.15 2.57 8.21 4.76 3.88
No. DNA seqs with functional annotation 122,936 291,953 258,658 164,249 283,761 196,369 196,972 126,392
No. DNA seqs without functional annotation (%) 493,857 492,870 379,143 328,754 336,998 328,584 303,145 200,083
Percent DNA seqs without functional annotation 80% 63% 59% 67% 54% 63% 61% 61%
No. DNA seqs with taxonomic annotation 190,326 417,920 349,888 241,541 379,911 288,356 304,003 186,421
Resampled sequencing effort (186,421)         
Number of archaeal sequences (186,421) 19,055 15,150 777 561 1,370 1,093 1,585 1,244
Number of bacterial sequences (186,421) 161,899 146,911 182,850 180,674 182,717 176,825 180,725 182,332