Table 4. Number of genes associated with the general COG functional categories
From: Complete genome sequence of Planctomyces limnophilus type strain (Mü 290T)
Code | value | %age | Description |
|---|---|---|---|
J | 149 | 5.2 | Translation, ribosomal structure and biogenesis |
A | 0 | 0.0 | RNA processing and modification |
K | 172 | 6.0 | Transcription |
L | 141 | 4.9 | Replication, recombination and repair |
B | 1 | 0.0 | Chromatin structure and dynamics |
D | 22 | 0.8 | Cell cycle control, cell division, chromosome partitioning |
Y | 0 | 0.0 | Nuclear structure |
V | 67 | 2.3 | Defense mechanisms |
T | 168 | 5.8 | Signal transduction mechanisms |
M | 166 | 5.8 | Cell wall/membrane/envelope biogenesis |
N | 150 | 5.2 | Cell motility |
Z | 0 | 0.0 | Cytoskeleton |
W | 0 | 0.0 | Extracellular structures |
U | 178 | 6.2 | Intracellular trafficking, secretion, and vesicular transport |
O | 124 | 4.3 | Posttranslational modification, protein turnover, chaperones |
C | 161 | 5.6 | Energy production and conversion |
G | 154 | 5.4 | Carbohydrate transport and metabolism |
E | 192 | 6.7 | Amino acid transport and metabolism |
F | 54 | 1.9 | Nucleotide transport and metabolism |
H | 127 | 4.4 | Coenzyme transport and metabolism |
I | 73 | 2.5 | Lipid transport and metabolism |
P | 148 | 5.1 | Inorganic ion transport and metabolism |
Q | 54 | 1.9 | Secondary metabolites biosynthesis, transport and catabolism |
R | 370 | 12.9 | General function prediction only |
S | 206 | 7.2 | Function unknown |
- | 1,907 | 43.6 | Not in COGs |