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Table 2 Microbial alpha-diversity and abundance of alpine (Val Lavirun, LAV) and High Arctic soils (Villum, VRS). Values represent means ± standard deviation (n = 3). Different superscript letters indicate significant (p < 0.05) differences between individual means, assessed by two-way factorial analysis of variance (ANOVA) followed by Tukey’s HSD post-hoc tests

From: Distinct taxonomic and functional profiles of high Arctic and alpine permafrost-affected soil microbiomes

Sample

Depth (cm)

Bacterial richness

Bacterial Shannon-H

Fungal richness

Fungal

Shannon-H

16S copies

(g− 1 dry soil)

ITS copies

(g− 1 dry soil)

 

LAV

       

aL_A

5

657 ± 40ac

3.9 ± 0.2ab

47 ± 12a

2.9 ± 0.9a

(1.1 ± 0.7) × 108a

(2.5 ± 1.5) × 106ab

 

aL_B

25

342 ± 25b

3.0 ± 0.2b

47 ± 30a

2.2 ± 0.4a

(5.2 ± 3.9) × 107a

(4.6 ± 2.4) × 106a

 

aL_Bc

45

849 ± 195c

4.1 ± 0.7a

235 ± 73b

3.2 ± 1.0a

(3.2 ± 2.1) × 107a

(7.8 ± 0.9) × 105b

 

pF

90

437 ± 50ab

2.9 ± 0.1b

79 ± 25a

2.0 ± 1.1a

(3.6 ± 2.5) × 106a

(2.8 ± 0.3) × 105b

 

VRS

        

BSC

1

2265 ± 62a

6.4 ± 0.1a

205 ± 19a

3.23 ± 0.42a

(3.3 ± 0.9) × 107a

(4.9 ± 3.1) × 106ab

 

aL_A

5

1888 ± 61b

6.0 ± 0.1bc

103 ± 17b

2.42 ± 0.118b

(2.2 ± 1.2) × 107a

(4.6 ± 4.7) × 106a

 

aL_B

15

1460 ± 32c

5.8 ± 0.0c

58 ± 17bc

2.13 ± 0.13b

(3.1 ± 0.5) × 108a

(6.6 ± 5.7) × 105b

 

aL_Bc

25

1336 ± 70c

5.8 ± 0.1c

51 ± 10c

2.20 ± 0.23b

(1.4 ± 0.2) × 107a

(8.2 ± 5.8) × 105b

 

pF_

45

1673 ± 42d

6.3 ± 0.2ab

98 ± 21b

2.66 ± 0.36ab

(1.1 ± 0.2) × 107a

(2.0 ± 1.9) × 105ab

 
  1. BSC = biological soil crust; aL = active layer soils; pF = permafrost soils
  2. A = A horizon enriched with organic matter and thus darker than the underlying B horizon
  3. B = B horizon
  4. Bc = transitional layer with characteristics of both B and C horizons, with B horizon characteristics dominant; partly affected by cryoturbation, as manifested by transitions between horizons
  5. 16S copies = copy numbers of bacterial 16S gene; ITS copies = copy numbers of fungal ITS region