Table 2 Assembly statistics of European agricultural soils metagenomic sequencing data
Assembly | No. of raw reads | Reads surviving | Assembly size | No. of | N50 | reads mapping | No. of |
|---|---|---|---|---|---|---|---|
| Â | Â | preprocessing | (bases) | contigs | Â | back (median) | bins |
Switzerland_1 | 19,655,846 | 15,324,319 | 394,292,388 | 523,285 | 706 | 22.34% | 3 |
Italy | 4,610,524,854 | 325,020,114 | 4,218,837,745 | 4,013,360 | 1,071 | 11.90% | 274 |
France_1 | 43,885,434 | 39,598,532 | 218,973,513 | 285,653 | 2,300 | 10.63% | 5 |
France_2_MONT | 6,899,456 | 3,827,469 | 6,875,231 | 7,701 | 29,900 | 80.09% | 0 |
France_2_EPO | 37,607,912 | 21,299,224 | 108,210,514 | 86,089 | 38,100 | 85.84% | 7 |
France_3 | 64,207,418 | 53,811,155 | 818,022,141 | 689,087 | 35,700 | 86.21% | 93 |
UK | 23,070,743 | 16,150,252 | 98,963,713 | 109,390 | 862 | 22.64% | 10 |
Germany_1 | 252,545,422 | 222,340,015 | 15,095,628,983 | 16,987,507 | 870 | 67.82% | 71 |
Germany_2_HRO | 13,669,334 | 10,814,927 | 142,707,839 | 218,316 | 1,300 | 8.45% | 0 |
Germany_2_FR | 12,664,828 | 9,906,458 | 182,733,943 | 260,021 | 2,100 | 13.91% | 1 |
Germany_3 | 22,903,380 | 16,803,398 | 218,286,828 | 341,269 | 1,100 | 11.69% | 0 |
Germany_4 | 26,545,532 | na | na | na | na | na | na |
Latvia | 225,414,876 | 26,801,474 | 1,342,086,652 | 1,300,992 | 1,033 | 23.80% | 89 |
Cyprus | 1,530,752,344 | 1,040,184,734 | 21,110,196,006 | 17,703,934 | 1,310 | 67.33% | 1,508 |
Finland | 1,887,593,101 | 1,340,782,681 | 13,822,566,779 | 9,774,981 | 1,791 | 75.19% | na |
Netherlands_1 | 616,237,073 | 321,404,802 | 14,733,110,980 | 10,972,195 | 1,629 | 54.73% | 106 |
Netherlands_2 | 549,290,648 | 138,320,059 | 470,252,336 | 411,467 | 39,500 | 73.29% | 20 |
Switzerland_2 | 7,291,290 | 6,269,183 | 111,921,494 | 162,781 | 657 | 13.15% | 0 |
Poland | 8,722,704 | 7,665,665 | 85,452,227 | 134,128 | 612 | 8.41% | 0 |
Slovenia_2 | 8,755,087 | 7,603,582 | 78,808,821 | 124,014 | 610 | 7.61% | 0 |