Table 1 Selected studies divided into 68 treatments of soil microbiomes with agricultural context and availability of metadata
Location | Name | Primary | Crop | Compartment | Collection | Soil type | pH | Soil |
|---|---|---|---|---|---|---|---|---|
ID | study | depth | simple | texture | ||||
1_1 | Switzerland_CA | [5] | Green manure | Bulk soil | 10 cm | Cambisol | 7.1 | Clayey |
1_2 | Switzerland_CB | [5] | Green manure | Bulk soil | 20 cm | Cambisol | 7.1 | Clayey |
1_3 | Switzerland_CC | [5] | Green manure | Bulk soil | 50 cm | Cambisol | 7.1 | Clayey |
1_4 | Switzerland_RA | [5] | Green manure | Bulk soil | 10 cm | Cambisol | 7.1 | Clayey |
1_5 | Switzerland_RB | [5] | Green manure | Bulk soil | 20 cm | Cambisol | 7.1 | Clayey |
1_6 | Switzerland_RC | [5] | Green manure | Bulk soil | 50 cm | Cambisol | 7.1 | Clayey |
2_1 | Italy_BS_G | [56] | Rice | Bulk soil | 10 cm | Cambisol* | 6* | Sandy loam* |
2_2 | Italy_BS_noG | [56] | Rice | Bulk soil | 10 cm | Cambisol* | 6* | Sandy loam* |
2_3 | Italy_FFS | [56] | Rice | Bulk soil | NA | Cambisol* | 6* | Sandy loam* |
2_4 | Italy_RS_G | [56] | Rice | Root-influenced | 3 cm | Cambisol* | 6* | Sandy loam* |
2_5 | Italy_RS_noG | [56] | Rice | Root-influenced | 3 cm | Cambisol* | 6* | Sandy loam* |
3_1 | France_1_IC | [4] | Asparagus | Root-influenced | NA | NA | NA | Sandy and Silty |
3_2 | France_1_FC | [4] | Asparagus | Root-influenced | NA | NA | NA | Sandy and Silty |
3_3 | France_1_ER | [4] | Asparagus | Root-influenced | NA | NA | NA | Sandy and Silty |
3_4 | France_1_ER_C | [4] | Asparagus | Root-influenced | NA | NA | NA | Sandy and Silty |
4_1 | France_2_MONT | [4] | Wheat* | Bulk soil* | NA | NA | 8.6 | Clay loam |
5_1 | France_2_EPO | [4] | Wheat* | Bulk soil* | NA | NA | 5.6 | Silty clay |
6_1 | France_3_BS | [4] | Bulk soil | Bulk soil | NA | NA | 7.25* | Sandy loam* |
6_2 | France_3_RS | [4] | Green manure | Root-influenced | NA | NA | 7.25* | Sandy loam* |
7_1 | UK_T0 | [4] | Green manure* | Bulk soil | NA | NA | 6.7 | Sandy* |
7_2 | UK_T7 | [4] | Bulk soil* | Bulk soil | NA | NA | 6.7 | Sandy* |
7_3 | UK_T14 | [4] | Bulk soil* | Bulk soil | NA | NA | 6.7 | Sandy* |
8_1 | Germany_1_BS-P-Int | [4] | Wheat | Bulk soil | 25 cm | Chernozem | 7.2 | Silty loam |
8_2 | Germany_1_BS-P-Ext | [4] | Wheat | Bulk soil | 25 cm | Chernozem | 7.2 | Silty loam |
8_3 | Germany_1_BS-CT-Int | [4] | Wheat | Bulk soil | 25 cm | Chernozem | 7.2 | Silty loam |
8_4 | Germany_1_BS-CT-Ext | [4] | Wheat | Bulk soil | 25 cm | Chernozem | 7.2 | Silty loam |
8_5 | Germany_1_RS-P-Int | [4] | Lettuce | Root-influenced | 25 cm | Chernozem | 7.2 | Silty loam |
8_6 | Germany_1_RS-P-Ext | [4] | Lettuce | Root-influenced | 25 cm | Chernozem | 7.2 | Silty loam |
8_7 | Germany_1_RS-CT-Int | [4] | Lettuce | Root-influenced | 25 cm | Chernozem | 7.2 | Silty loam |
8_8 | Germany_1_RS-CT-Ext | [4] | Lettuce | Root-influenced | 25 cm | Chernozem | 7.2 | Silty loam |
9_1 | Germany_2_HRO_C | [7] | Maize* | Bulk soil* | NA | Cambisol | 6.3 | Loamy sand |
9_2 | Germany_2_HRO | [7] | Maize* | Bulk soil* | NA | Cambisol | 6.3 | Loamy sand |
10_1 | Germany_2_FR_C | [7] | Maize* | Bulk soil* | NA | Cambisol | 6.35 | Silty loam |
10_2 | Germany_2_FR | [7] | Maize* | Bulk soil* | NA | Cambisol | 6.35 | Silty loam |
11_1 | Germany_3_RA_0 | [7] | Bulk soil | Bulk soil | 5 cm | Luvisol | 7.5 | Silty clay loam |
11_2 | Germany_3_RA_1 | [7] | Alfalfa | Bulk soil | 5 cm | Luvisol | 7.5 | Silty clay loam |
11_3 | Germany_3_RA_3 | [7] | Alfalfa | Bulk soil | 5 cm | Luvisol | 7.5 | Silty clay loam |
11_4 | Germany_3_RA_6 | [7] | Wheat | Bulk soil | 5 cm | Luvisol | 7.5 | Silty clay loam |
11_5 | Germany_3_RA_12 | [7] | Maize | Bulk soil | 5 cm | Luvisol | 7.5 | Silty clay loam |
11_6 | Germany_3_RA_24 | [7] | Wheat | Bulk soil | 5 cm | Luvisol | 7.5 | Silty clay loam |
12_1 | Germany_4_ARD_BS | [37] | Bulk soil | Bulk soil | 20 cm | Luvisol | 5.7 | Loamy sand |
12_2 | Germany_4_ARD_RS | [37] | Apple plants | Root-influenced | 20 cm | Luvisol | 5.7 | Loamy sand |
12_3 | Germany_4_CO_BS | [37] | Bulk soil | Bulk soil | 20 cm | Luvisol | 5.7 | Loamy sand |
12_4 | Germany_4_CO_RS | [37] | Apple plants | Root-influenced | 20 cm | Luvisol | 5.7 | Loamy sand |
13_1 | Latvia_PPS | [37] | Lettuce | Root-influenced | NA | Peat soil | 6.23 | Peat soil |
13_2 | Latvia_PPS_Chitin | [37] | Lettuce | Root-influenced | NA | Peat soil | 6.03 | Peat soil |
14_1 | Cyprus_BS_SC | [37] | Bulk soil | Bulk soil | NA | Sandy clay loam | 8.6 | Sandy clay loam |
14_2 | Cyprus_BS_S20 | [37] | Bulk soil | Bulk soil | NA | Sandy clay loam | 8.6 | Sandy clay loam |
14_3 | Cyprus_BS_S100 | [37] | Bulk soil | Bulk soil | NA | Sandy clay loam | 8.6 | Sandy clay loam |
14_4 | Cyprus_RS_EC | [37] | Lettuce | Root-influenced | NA | Sandy clay loam | 8.6 | Sandy clay loam |
14_5 | Cyprus_RS_E20 | [37] | Lettuce | Root-influenced | NA | Sandy clay loam | 8.6 | Sandy clay loam |
14_6 | Cyprus_RS_E100 | [37] | Lettuce | Root-influenced | NA | Sandy clay loam | 8.6 | Sandy clay loam |
15_1 | Finland_OX | [37] | Bulk soil | Bulk soil | 75?cm | Holocene | 3.7 | Clayey |
16_1 | Netherlands_1_RS_At | [22] | A. thaliana | Root-influenced | 10 cm | Loamy sand soil | NA | Loamy sand |
16_2 | Netherlands_1_RS_Zm | [22] | Maize | Root-influenced | 10 cm | Loamy sand soil | NA | Loamy sand |
16_3 | Netherlands_1_RS_Ta | [22] | Wheat | Root-influenced | 10 cm | Loamy sand soil | NA | Loamy sand |
16_4 | Netherlands_1_BS | [22] | Bulk soil | Bulk soil | 10 cm | Loamy sand soil | NA | Loamy sand |
17_1 | Netherlands_2_BS | [22] | Bulk soil | Bulk soil | NA | Podzol | 5.4 | Sandy |
17_2 | Netherlands_2_RS_AtCm3 | [22] | A. thaliana | Root-influenced | NA | Podzol | 5.4 | Sandy |
17_3 | Netherlands_2_RS_AtCp3 | [22] | A. thaliana | Root-influenced | NA | Podzol | 5.4 | Sandy |
17_4 | Netherlands_2_RS_AtFm3 | [22] | A. thaliana | Root-influenced | NA | Podzol | 5.4 | Sandy |
17_5 | Netherlands_2_RS_AtMm3 | [22] | A. thaliana | Root-influenced | NA | Podzol | 5.4 | Sandy |
1_7 | Switzerland_2_ConvTill | [22] | Green manure | Bulk soil | 10 cm | Cambisol | 7.33 | Clayey |
1_8 | Switzerland_2_RedTill | [22] | Green manure | Bulk soil | 10 cm | Cambisol | 7.08 | Clayey |
18_1 | Poland_ConvTill | [22] | Lupine* | Bulk soil | 10 cm | Arenosol | 6.3 | Sandy |
18_2 | Poland_RedTill | [22] | Lupine* | Bulk soil | 10 cm | Arenosol | 6.2 | Sandy |
19_1 | Slovenia_2_ConvTill | [22] | Green manure | Bulk soil | 10 cm | Cambisol | 6.43 | Loamy |
19_2 | Slovenia_2_RedTill | [22] | Green manure | Bulk soil | 10 cm | Cambisol | 6.95 | Loamy |