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Table 3 Indicator microorganisms for different phases of crop rotation

From: Soil microbial communities following 20 years of fertilization and crop rotation practices in the Czech Republic

Crop rotation

Kingdom

Phylum

Class

Order

Family

Genus

Section A (after potatoes)

Fungi

Ascomycota

Dothideomycetes

Pleosporales

Pleosporaceae

Bipolaris

Fungi

Zoopagomycota

Zoopagomycetes

Zoopagales

Piptocephalidaceae

Kuzuhaea

Fungi

Glomeromycota

Glomeromycetes

Glomerales

Glomeraceae

Glomus

Section B (wheat)

Fungi

Ascomycota

Leotiomycetes

Erysiphales

Erysiphaceae

Blumeria

Fungi

Ascomycota

Dothideomycetes

Capnodiales

Mycosphaerellaceae

Zymoseptoria

Fungi

Basidiomycota

Tremellomycetes

Filobasidiales

Filobasidiaceae

Naganishia

Section C (after barley)

Fungi

Mucoromycota

Umbelopsidomycetes

Umbelopsidales

Umbelopsidaceae

Umbelopsis

Fungi

Ascomycota

Sordariomycetes

Magnaporthales

Magnaporthaceae

Gaeumannomyces

Fungi

Ascomycota

Sordariomycetes

Hypocreales

Cordycipitaceae

Isaria

Fungi

Ascomycota

Leotiomycetes

Helotiales

Helotiaceae

Meliniomyces

  1. In each of the three sections of experimental fields, potato (Solanum tuberosum L.), winter wheat (Triticum aestivum L.) and spring barley (Hordeum vulgare L.) were rotated in that order every 3 years, but the sections differed in the currently grown crop: (1) Section A (samples were collected after potato harvesting), (2) Section B (samples were collected from field vegetated with wheat), (3) Section C (samples were collected after barley harvesting)