Accurate prediction of metagenome-assembled genome completeness by MAGISTA, a random forest model built on alignment-free intra-bin statistics

Table 3 Performance of all models on the test dataset (all) and subsets containing real and simulated reads

Bin statistic	Model	\({\mathbf{R}}_{{\mathbf{y}}\sim {\mathbf{x}}}^{{\textbf{2}}}\)			RMSE
Bin statistic	Model	Real	Simulated	All	Real	Simulated	All
Completeness	CheckM	0.744	0.612	0.685	17.28	22.54	20.05
	MAGISTA	0.814	0.730	0.777	14.73	18.81	16.87
	MAGISTIC	0.905	0.836	0.873	10.52	14.68	12.75
Purity	CheckM	0.722	-0.261	0.143	7.74	30.61	22.21
	MAGISTA	0.204	0.240	0.365	13.10	23.76	19.12
	MAGISTIC	0.672	0.234	0.449	8.41	23.85	17.80
F1	CheckM	0.778	0.536	0.666	14.85	23.46	19.58
	MAGISTA	0.787	0.725	0.766	14.57	18.04	16.38
	MAGISTIC	0.884	0.775	0.834	10.75	16.32	13.79

ISSN: 2524-6372