Table 1 Topological properties of microbial co-occurrence networks in the Chesapeake Bay
From: Estuarine gradients dictate spatiotemporal variations of microbiome networks in the Chesapeake Bay
Groups | Nodes | Edges | Fragmentation (f) | Average degree | Network diameter | Graph density | Modularity | Components | Average clustering coefficient | Average path length | Number of Clusters | Number of negative correlations | Percentage of negative correlations (%) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
All | 387 | 4130 | 0.18 | 21.3 | 8 | 0.055 | 0.513 | 3 | 0.509 | 3.118 | 7 | 286 | 6.92 |
Alla | 377 | 3917 | 0.23 | 20.8 | 8 | 0.055 | 0.506 | 4 | 0.506 | 3.137 | 9 | 265 | 6.77 |
Allb | 377 | 3525 | 0.19 | 18.7 | 8 | 0.050 | 0.54 | 3 | 0.497 | 3.163 | 8 | 272 | 7.72 |
Allc | 377 | 3855 | 0.27 | 20.5 | 8 | 0.054 | 0.498 | 5 | 0.509 | 3.222 | 9 | 241 | 6.25 |
Winter | 331 | 3430 | 0.12 | 20.7 | 8 | 0.063 | 0.554 | 2 | 0.392 | 2.822 | 9 | 526 | 15.34 |
Spring | 340 | 3296 | 0 | 19.4 | 8 | 0.057 | 0.576 | 1 | 0.413 | 2.866 | 6 | 513 | 15.56 |
Summer | 338 | 3983 | 0 | 23.6 | 6 | 0.070 | 0.576 | 1 | 0.427 | 2.638 | 6 | 720 | 18.08 |
Autumn | 337 | 3790 | 0 | 22.5 | 6 | 0.067 | 0.591 | 1 | 0.446 | 2.700 | 6 | 707 | 18.65 |
Upper Bay | 367 | 4526 | 0 | 24.7 | 7 | 0.067 | 0.538 | 1 | 0.474 | 2.859 | 7 | 344 | 7.60 |
Lower Bay | 376 | 5012 | 0 | 26.7 | 8 | 0.071 | 0.534 | 1 | 0.479 | 2.799 | 7 | 559 | 11.15 |