Table 1 Summary statistics and features of Black Sea MAGs retrieved from 5 and 30 m samples
From: The microbiome of the Black Sea water column analyzed by shotgun and genome centric metagenomics
Phylum/Division | Taxonomic affiliation of MAGs (GTDB, Referenced groups) | n° of MAGs | Range Estimated Genome size (Mp) | Range GC (%) | Range median intergenic spacer (bp) | Av. Compl. (%) | Av. Cont. (%) |
|---|---|---|---|---|---|---|---|
α-Proteobacteria | g_Planktomarina (3), g_Puniceispirillum (6), g_Reyranella (1), f_Rhodobacteraceae (7), o_Pelagibacterales (8), o__Parvibaculales (5), f_Puniceispirillaceae (6), f_Nisaeaceae (1), o_Rickettsiales (3), o_Rhizobiales (2), o_Rhodospirillales_A (1), c_Alphaproteobacteria (3) | 52 | 1–7.9 | 28–66 | 2–65 | 75.55 | 1.19 |
ɣ-Proteobacteria | g_Luminiphilus (11), g_Litoricola (3), g_Nevskia (1), f_Methylophilaceae (5), f_Porticoccaceae (1), f_Pseudohongiellaceae (5), f_Shewanellaceae (1), o_Burkholderiales (2), o_SAR86 (11) o_Pseudomonadales (5), c_Gammaproteobacteria (3) | 51 | 1–4.1 | 31–69 | 1–86 | 70.34 | 1.29 |
Bacteroidota | f_Cryomorphaceae (4), f_Flavobacteriaceae (23), o_Flavobacteriales (8), f_Balneolaceae (2), f_Crocinitomicaceae (2), c_Bacteroidia (1) | 44 | 1.19–2.57 | 28–58 | 4–43 | 73.91 | 0.94 |
Thermoplasmatota | f_Poseidoniaceae (6), f_Thalassoarchaeaceae (1), g_Poseidonia (6) | 13 | 1.82–2.35 | 37–58 | 25–38 | 80.67 | 0.30 |
Actinobacteriota | o_Nanopelagicales (1), g_Aquiluna (1), o_Actinomarinales (5), f_Ilumatobacteraceae (4), c_Thermoleophilia (1) | 13 | 1.23–2.22 | 32–71 | 2–23 | 76.79 | 1.45 |
Cyanobacteria | g_Synechococcus_C (10) | 10 | 1.8–2.23 | 55–63 | 25–36 | 79.59 | 2.37 |
Planctomycetota | f_Planctomycetaceae (1), o_Pirellulales; (4), p_Planctomycetota (3), g_Rubripirellula (1) | 9 | 3–6.4 | 49–72 | 45–132 | 87.14 | 0.95 |
Verrucomicrobiota | o_Pedosphaerales (2), o_Opitutales (1), f_Puniceicoccaceae (4), f__Akkermansiaceae (1) | 8 | 2–4.8 | 42–60 | 23–74 | 83.51 | 4.21 |
Marinisomatota | g_Marinisoma (3) | 3 | 0.8–0.93 | 31–32 | 2–3 | 55.31 | 0.36 |
Margulisbacteria | c_ZB3 (1) | 1 | 1.71 | 42.5 | 10 | 67.53 | 0 |