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Table 1 Summary of presented DoD microbiome-related research

From: Meeting report of the third annual Tri-Service Microbiome Consortium symposium

Organization

Thematic area

Topic

Army

 CCDC SC/ USARIEM

Human microbiomes: Warfighter performance (stress, diet and the gut microbiome)

Use of in vitro human gut models to extend insight into clinical study on effects of military food rations on the gut microbiota [4, 5]

 USACEHR/ WRAIR

Human microbiomes: Warfighter performance (stress, diet and the gut microbiome)

Effects of post-traumatic stress disorder-like stress and microgravity on the microbiome-gut-brain axis in animal models

 USUHS

Human microbiomes: Warfighter performance (stress, diet and the gut microbiome)

Gut microbiota response to traveler’s diarrhea and antibiotic treatment

 USUHS

Human microbiomes: Warfighter protection (respiratory, nasal, oral and otic microbiomes)

Relations between the nasal microbiota and skin and soft tissue infections in Army recruits [6, 7]

 ERDC-EL

Environmental microbiomes (soil and marine)

Effectively using microbes to degrade munitions [8]

 ERDC-CRREL

Environmental microbiomes (soil and marine)

Understanding microbial communities during extreme weather events [9]

 CCDC-ARL

Environmental microbiomes (polymicrobial communities)

Designing functional microbial consortia for expedient manufacturing [10]

 CCDC SC

Emerging tools

Organoid models for studying host-microbe interactions [11]

 CCDC SC

Enabling techniques

Increasing physiologic relevance of in vitro gut fermentation models

 WRAIR

Enabling techniques

Applications of single cell RNAseq in cellular immunology

Air Force

 59th Medical AF

Human microbiomes: Warfighter protection (respiratory, nasal, oral and otic microbiomes)

Temporal shifts in the skin microbiome of Air Force recruits during initial military training [12]

 AFIT

Environmental microbiomes (built environment)

Methodological considerations for studying the microbiome of the built environment [13]

 AFRL

Polymicrobial communities

Aircraft microbiomes and relation to biocorrosion and biodeterioration [14]

 AFRL

Engineering microbiomes

Engineering microbes to sense and respond to physiologic changes in humans

 AFRL

Emerging tools

Gut-brain on a chip microfluidic models to study host-microbe interactions

Navy

 NAMRU- Dayton

Human microbiomes: Warfighter performance (stress, diet and the gut microbiome)

Potential applications of probiotics for Warfighter performance

 NRL

Environmental microbiomes (soil and marine)

Using marine microbes for electricity production [15]

 NRL

Environmental microbiomes (polymicrobial communities)

Microbiomes in ship hull biofouling

 NRL

Engineering microbiomes

In situ engineering of autotrophic microbial communities [16]

 NRL

Enabling techniques

Multi-omics and bioinformatics for microbiome analyses

DARPA

Program update

Ongoing DARPA programs supporting research into using microbes for environmental sensing and reporting, modulating mosquito attractiveness, and nasal-based delivery of neuromodulatory microbes.

DTRA

Program update

Ongoing DTRA programs to understand radiation effects on microorganisms

MVM-CoRE (non-DoD)

Human microbiomes: Warfighter performance (stress, diet and the human microbiome)

US Veteran Microbiome Project status update [17]

  1. AFIT Air Force (AF) Institute of Technology; AFRL AF Research Laboratory; ARL Army Research Laboratory; CCDC SC Combat Capabilities Development Command-Soldier Center; CFD Combat Feeding Directorate; CRREL Cold Regions Research and Engineering Laboratory; DARPA Defense Advanced Research Projects Agency; DoD US Department of Defense; DTRA Defense Threat Reduction Agency; EL Environmental Laboratory; ERDC US Army Engineer Research and Development Center; MVM-CoRE Military and Veteran Microbiome Consortium for Research and Education; NAMRU Naval Medical Research Unit; NRL Naval Research Laboratory; USACEHR US Army Center for Environmental Health Research; USAMRIID US Army Medical Research Institute of Infectious Diseases; USARIEM US Army Research Institute of Environmental Medicine; USUHS Uniformed Services University of the Health Sciences; WRAIR Walter Reed Army Institute of Research