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Table 4 Abundant microbial taxa in subway air samples (MetaSUB v. Jiang method)

From: Performance evaluation of a new custom, multi-component DNA isolation method optimized for use in shotgun metagenomic sequencing-based aerosol microbiome research

MetaSUB v. Jiang
MetaSubJiang
PhylumprevalenceabundancePhylumprevalenceAbundance
meantotalmeantotal
Actinobacteria2.7924848.69%Actinobacteria1.1362560.08%
Proteobacteria2.314,37928.58%Proteobacteria1.0609023.40%
Ascomycota2.418435.28%Firmicutes0.715104.58%
Bacteroidetes2.131485.10%Bacteroidetes0.914363.40%
Firmicutes1.632504.52%Ascomycota1.18222.78%
Basidiomycota2.35983.95%Deinococcus-Thermus1.0771.94%
Cyanobacteria2.35181.44%Basidiomycota1.12861.91%
Deinococcus-Thermus2.41901.35%Cyanobacteria1.12431.50%
Euryarchaeota1.94950.63%Euryarchaeota0.92310.15%
Acidobacteria2.61130.08%Planctomycetes1.2520.04%
FamilyprevalenceabundanceFamilyprevalenceabundance
meantotalmeantotal
Micrococcaceae2.778513.96%Micrococcaceae1.233625.63%
Nocardioidaceae2.83016.58%Nocardioidaceae1.11237.02%
Microbacteriaceae2.612135.05%Geodermatophilaceae1.3654.77%
Sphingomonadaceae2.810104.20%Microbacteriaceae1.04864.45%
Moraxellaceae2.06554.12%Intrasporangiaceae1.4974.15%
Comamonadaceae2.47503.68%Moraxellaceae0.92894.05%
Geodermatophilaceae3.01493.59%Sphingomonadaceae1.03573.92%
Intrasporangiaceae3.02103.23%Comamonadaceae1.13372.60%
Hymenobacteraceae2.91822.17%Staphylococcaceae0.91692.39%
Flavobacteriaceae2.215942.04%Dietziaceae1.1191.99%
GenusprevalenceabundanceGenusprevalenceabundance
meantotalmeantotal
Arthrobacter2.73915.63%Micrococcus2.12111.69%
Micrococcus2.8285.60%Arthrobacter1.11539.34%
Nocardioides2.71673.50%Kocuria1.2343.53%
Psychrobacter1.91313.40%Psychrobacter0.9643.46%
Sphingomonas2.94653.38%Nocardioides1.0613.38%
Blastococcus3.0592.30%Sphingomonas1.01553.20%
Corynebacterium2.65592.04%Blastococcus1.3263.16%
Hymenobacter2.9982.02%Marmoricola2.0122.78%
Staphylococcus2.02891.77%Staphylococcus0.91282.33%
Kocuria2.7791.76%Dietzia1.1191.99%
SpeciesprevalenceabundanceSpeciesprevalenceabundance
meantotalmeantotal
Arthrobacter sp. H413.031.14%Arthrobacter sp. H413.032.36%
Micrococcus luteus3.030.88%Arthrobacter sp. Leaf2343.032.15%
Chlorogloea sp. CCALA 6953.030.74%Marmoricola sp. Leaf4463.031.71%
Rubrobacter aplysinae3.030.71%Deinococcus marmoris3.031.56%
Arthrobacter sp. Leaf2343.030.71%Blastococcus sp. DSM 442683.031.24%
Aspergillus sp. MA 60413.030.69%Arthrobacter agilis3.031.23%
Marmoricola sp. Leaf4463.030.67%Chlorogloea sp. CCALA 6953.031.14%
Deinococcus marmoris3.030.66%Marmoricola scoriae3.030.84%
Acidovorax temperans3.030.61%Janibacter sp. Soil7283.030.82%
Stereum hirsutum3.030.57%Mrakia frigida3.030.77%
  1. Top ten microbial phyla, families, genera and species in subway air samples (N = 3) that were split and processed with the MetaSUB (N = 3) and Jiang (N = 3) methods