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Table 1 Details of cultured isolates and assembled genomes. For more details on isolate sequencing, see Additional file 6: Table S4

From: The impact of sequencing depth on the inferred taxonomic composition and AMR gene content of metagenomic samples

Sample Isolate number Species Genome size (bp) Number of contigs (number circularized)
Effluent 1 Citrobacter portucalensis 5,213,846 4 (4)
2 Enterobacter cloacae 5,590,302 9 (7)
3 Enterobacter cloacae 5,465,276 7 (5)
4 Enterobacter cloacae 5,393,186 8 (4)
Pig caeca 1 Escherichia coli 4,898,477 5 (5)
2 Escherichia coli 4,967,077 2 (2)
Upstream sediment 1 Citrobacter freundii 4,839,493 1 (1)