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Table 3 Draft genomes, source, geographic locale, genome size, topology, %G + C content, No. of CDS, sequence type (ST), accession numbers, GOLD project ID, and locus tag of strains captured under the FDA-CFSAN Cronobacter GenomeTrakr NCBI BioProject PRJNA258403 and used in this study

From: Draft genomes of Cronobacter sakazakii strains isolated from dried spices bring unique insights into the diversity of plant-associated strains

Strain Name Source Geographic Locale Genome Size (kb) Topology G + C content (%) No. of CDS ST NCBI Accession no. GOLD Analysis Project IDb Locus tag
MOD1_Jor173 Unknown Spice Jordan 4403 Circular 56.9 4030 1, CC1 PVCG00000000 Ga0259519 PVCG01
MOD1_Jor146 Liquorice Jordan 4409 Circular 56.9 4059 3, CC3 PVMV00000000 Ga0259523 PVMV01
MOD1_Jor96 Fennel Jordan 4667 Circular 56.6 4337 4, CC4 PVCE00000000 Ga0259516 PVCE01
MOD1_Jor148 Unknown Spice Jordan 4573 Circular 56.8 4251 4, CC4 PVCF00000000 Ga0259517 PVCF01
MOD1_Jor154 Unknown Spice Jordan 4392 Circular 56.9 4064 4, CC4 NITP00000000 Ga0260550 NITP01
MOD1_Jor178 Chamomile Jordan 4787 Circular 56.4 4409 4, CC4 PVBV00000000 Ga0259520 PVBV01
MOD1_KW13 Dried Garlic Republic of Korea 4493 Circular 56.9 4176 13, CC13 NITD00000000 Ga0260553 NITD01
MOD1_Jor183 Unknown Spice Jordan 4326 Circular 56.9 3934 21, CC21 NITN00000000 Ga0260551 NITN01
MOD1_788569 Siberian Ginseng, Eleutherom sentiocosus Root Powder China 4503 Circular 56.8 4162 31, CC31 PVCL00000000 Ga0259506 PVCL01
MOD1_KW3 Dried Hot Pepper Republic of Korea 4372 Circular 56.9 4042 40, CC40 NITH00000000 Ga0260552 NITH01
MOD1_AS-2 Allspice USA 4306 Circular 57.0 3987 64, CC64 PVCH00000000 Ga0259508 PVCH01
MOD1_AS-4 Allspice USA 4297 Circular 57.0 3975 64, CC64 PVCI00000000 Ga0259509 PVCI01
MOD1_AS-13 Allspice USA 4312 Circular 57.0 3980 64, CC64 PVCJ00000000 Ga0259510 PVCJ01
MOD1_AS-15 Allspice USA 4313 Circular 57.0 3983 64, CC64 PVCK00000000 Ga0259511 PVCK01
MOD1_Jor172 Unknown Spice Jordan 4331 Circular 57.0 4012 64, CC64 NCWD00000000 Ga0260555 NCWD01
MOD1_O21_16 Oregano USA 4407 Circular 57.0 4071 99, CC99 PVSQ00000000 Ga0260560 PVSQ01
MOD1_O26_1 Oregano USA 4408 Circular 57.0 4071 99, CC99 PVBX00000000 Ga0259522 PVBX01
MOD1_O21_13 Oregano USA 4375 Circular 57.0 4059 219, CC155 PVBW00000000 Ga0259521 PVBW01
MOD1_O23mB Oregano USA 4339 Circular 56.9 3991 226, CC8 PVBZ00000000 Ga0259507 PVBZ01
MOD1_O26_4 Oregano USA 4338 Circular 56.9 3972 226, CC8 PVBY00000000 Ga0260554 PVBY01
MOD1_Jor20 Unknown Spice Jordan 4468 Circular 56.7 4117 226, CC8 PVCA00000000 Ga0259512 PVCA01
MOD1_Jor22 Chamomile Jordan 4469 Circular 56.7 4112 226, CC8 PVCB00000000 Ga0259513 PVCB01
MOD1_Jor44 Unknown Spice Jordan 4482 Circular 56.9 4133 8, CC8a PVCC00000000 Ga0259514 PVCC01
MOD1_Jor151 Unknown Spice Jordan 4489 Circular 56.9 4142 8, CC8a PVMW00000000 Ga0259518 PVMW01
MOD1_Jor93 Unknown Spice Jordan 4331 Circular 57.1 3973 643 PVCD00000000 Ga0259515 PVCD01
MOD1_Jor103 Unknown Spice Jordan 4425 Circular 57.0 4014 643 NITR00000000 Ga0260549 NITR01
  1. aSix exact matches (100% homology) of the allelic profiles (allele profile number in parentheses) for the Cronobacter MLST genes: (8) fusA, (7) glnS, (5) gltB, (8) gyrB, (15) infB and (10) pps, and the closest match of these strains in the MLST database is strain 2274, MLST ID 1390 (alias, L1). The closest ST match is ST8, CC8 except that the allelic profile number for atpD was 121 for these strains which differs from the reported allelic profile number 11 for this ST.
  2. bJGI IMG/MER study ID number is Gs0133658