Skip to main content

Table 3 Draft genomes, source, geographic locale, genome size, topology, %G + C content, No. of CDS, sequence type (ST), accession numbers, GOLD project ID, and locus tag of strains captured under the FDA-CFSAN Cronobacter GenomeTrakr NCBI BioProject PRJNA258403 and used in this study

From: Draft genomes of Cronobacter sakazakii strains isolated from dried spices bring unique insights into the diversity of plant-associated strains

Strain Name

Source

Geographic Locale

Genome Size (kb)

Topology

G + C content (%)

No. of CDS

ST

NCBI Accession no.

GOLD Analysis Project IDb

Locus tag

MOD1_Jor173

Unknown Spice

Jordan

4403

Circular

56.9

4030

1, CC1

PVCG00000000

Ga0259519

PVCG01

MOD1_Jor146

Liquorice

Jordan

4409

Circular

56.9

4059

3, CC3

PVMV00000000

Ga0259523

PVMV01

MOD1_Jor96

Fennel

Jordan

4667

Circular

56.6

4337

4, CC4

PVCE00000000

Ga0259516

PVCE01

MOD1_Jor148

Unknown Spice

Jordan

4573

Circular

56.8

4251

4, CC4

PVCF00000000

Ga0259517

PVCF01

MOD1_Jor154

Unknown Spice

Jordan

4392

Circular

56.9

4064

4, CC4

NITP00000000

Ga0260550

NITP01

MOD1_Jor178

Chamomile

Jordan

4787

Circular

56.4

4409

4, CC4

PVBV00000000

Ga0259520

PVBV01

MOD1_KW13

Dried Garlic

Republic of Korea

4493

Circular

56.9

4176

13, CC13

NITD00000000

Ga0260553

NITD01

MOD1_Jor183

Unknown Spice

Jordan

4326

Circular

56.9

3934

21, CC21

NITN00000000

Ga0260551

NITN01

MOD1_788569

Siberian Ginseng, Eleutherom sentiocosus Root Powder

China

4503

Circular

56.8

4162

31, CC31

PVCL00000000

Ga0259506

PVCL01

MOD1_KW3

Dried Hot Pepper

Republic of Korea

4372

Circular

56.9

4042

40, CC40

NITH00000000

Ga0260552

NITH01

MOD1_AS-2

Allspice

USA

4306

Circular

57.0

3987

64, CC64

PVCH00000000

Ga0259508

PVCH01

MOD1_AS-4

Allspice

USA

4297

Circular

57.0

3975

64, CC64

PVCI00000000

Ga0259509

PVCI01

MOD1_AS-13

Allspice

USA

4312

Circular

57.0

3980

64, CC64

PVCJ00000000

Ga0259510

PVCJ01

MOD1_AS-15

Allspice

USA

4313

Circular

57.0

3983

64, CC64

PVCK00000000

Ga0259511

PVCK01

MOD1_Jor172

Unknown Spice

Jordan

4331

Circular

57.0

4012

64, CC64

NCWD00000000

Ga0260555

NCWD01

MOD1_O21_16

Oregano

USA

4407

Circular

57.0

4071

99, CC99

PVSQ00000000

Ga0260560

PVSQ01

MOD1_O26_1

Oregano

USA

4408

Circular

57.0

4071

99, CC99

PVBX00000000

Ga0259522

PVBX01

MOD1_O21_13

Oregano

USA

4375

Circular

57.0

4059

219, CC155

PVBW00000000

Ga0259521

PVBW01

MOD1_O23mB

Oregano

USA

4339

Circular

56.9

3991

226, CC8

PVBZ00000000

Ga0259507

PVBZ01

MOD1_O26_4

Oregano

USA

4338

Circular

56.9

3972

226, CC8

PVBY00000000

Ga0260554

PVBY01

MOD1_Jor20

Unknown Spice

Jordan

4468

Circular

56.7

4117

226, CC8

PVCA00000000

Ga0259512

PVCA01

MOD1_Jor22

Chamomile

Jordan

4469

Circular

56.7

4112

226, CC8

PVCB00000000

Ga0259513

PVCB01

MOD1_Jor44

Unknown Spice

Jordan

4482

Circular

56.9

4133

8, CC8a

PVCC00000000

Ga0259514

PVCC01

MOD1_Jor151

Unknown Spice

Jordan

4489

Circular

56.9

4142

8, CC8a

PVMW00000000

Ga0259518

PVMW01

MOD1_Jor93

Unknown Spice

Jordan

4331

Circular

57.1

3973

643

PVCD00000000

Ga0259515

PVCD01

MOD1_Jor103

Unknown Spice

Jordan

4425

Circular

57.0

4014

643

NITR00000000

Ga0260549

NITR01

  1. aSix exact matches (100% homology) of the allelic profiles (allele profile number in parentheses) for the Cronobacter MLST genes: (8) fusA, (7) glnS, (5) gltB, (8) gyrB, (15) infB and (10) pps, and the closest match of these strains in the MLST database is strain 2274, MLST ID 1390 (alias, L1). The closest ST match is ST8, CC8 except that the allelic profile number for atpD was 121 for these strains which differs from the reported allelic profile number 11 for this ST.
  2. bJGI IMG/MER study ID number is Gs0133658
Back to article page

Environmental Microbiome

ISSN: 2524-6372