One complete and three draft genome sequences of four Brochothrix thermosphacta strains, CD 337, TAP 175, BSAS1 3 and EBP 3070

Illikoud, Nassima; Klopp, Christophe; Roulet, Alain; Bouchez, Olivier; Marsaud, Nathalie; Jaffrès, Emmanuel; Zagorec, Monique

doi:10.1186/s40793-018-0333-z

Environmental Microbiome

Table 1 Classification and general features of B. thermosphacta strains CD 337, TAP 175, BSAS1 13, and EBP 3070

From: One complete and three draft genome sequences of four Brochothrix thermosphacta strains, CD 337, TAP 175, BSAS1 3 and EBP 3070

MIGS ID	Property	CD 337		TAP 175		BSAS1 3		EBP 3070
MIGS ID	Property	Term	Evidence code^a	Term	Evidence code^a	Term	Evidence code^a	Term	Evidence code^a
	Classification	Domain Bacteria	TAS [32]	Domain Bacteria	TAS [32]	Domain Bacteria	TAS [32]	Domain Bacteria	TAS [32]
		Phylum Firmicutes	TAS [33, 34]	Phylum Firmicutes	TAS [33, 34]	Phylum Firmicutes	TAS [33, 34]	Phylum Firmicutes	TAS [33, 34]
		Class Bacilli	TAS [35]	Class Bacilli	TAS [35]	Class Bacilli	TAS [35]	Class Bacilli	TAS [35]
		Order Bacillales	TAS [36]	Order Bacillales	TAS [36]	Order Bacillales	TAS [36]	Order Bacillales	TAS [36]
		Family Listeriaceae	TAS [37]	Family Listeriaceae	TAS [37]	Family Listeriaceae	TAS [37]	Family Listeriaceae	TAS [37]
		Genus Brochothrix	TAS [38]	Genus Brochothrix	TAS [38]	Genus Brochothrix	TAS [38]	Genus Brochothrix	TAS [38]
		Species Brochothrix thermosphacta	TAS [38]	Species Brochothrix thermosphacta	TAS [38]	Species Brochothrix thermosphacta	TAS [38]	Species Brochothrix thermosphacta	TAS [38]
		Strain CD 337	TAS [2]	Strain TAP 175	TAS [2]	Strain BSAS1 3	TAS [2]	Strain EBP 3070	TAS [2]
	Gram stain	Positive	IDA	Positive	IDA	Positive	IDA	Positive	IDA
	Cell shape	Rod	IDA	Rod	IDA	Rod	IDA	Rod	IDA
	Motility	Non-motile	NAS [5]	Non-motile	NAS [5]	Non-motile	NAS [5]	Non-motile	NAS [5]
	Sporulation	Non-sporulating	NAS [5]	Non-sporulating	NAS [5]	Non-sporulating	NAS [5]	Non-sporulating	NAS [5]
	Temperature range	0–30 °C	NAS [5]	0–30 °C	NAS [5]	0–30 °C	NAS [5]	0–30 °C	NAS [5]
	Optimum temperature	20–25 °C	NAS [5]	20–25 °C	NAS [5]	20–25 °C	NAS [5]	20–25 °C	NAS [5]
	pH range; Optimum	5–9; 7	NAS [5]	5–9; 7	NAS [5]	5–9; 7	NAS [5]	5–9; 7	NAS [5]
	Carbon source	Glucose, ribose, glycerol, mannose, mannitol, gluconate, glucosamine, fructose, maltose, sucrose, trehalose	NAS [39]	Glucose, ribose, glycerol, mannose, mannitol, gluconate, glucosamine, fructose, maltose, sucrose, trehalose	NAS [39]	Glucose, ribose, glycerol, mannose, mannitol, gluconate, glucosamine, fructose, maltose, sucrose, trehalose	NAS [39]	Glucose, ribose, glycerol, mannose, mannitol, gluconate, glucosamine, fructose, maltose, sucrose, trehalose	NAS [39]
MIGS-6	Habitat	Cooked and peeled spoiled shrimp	TAS [2]	Non-spoiled chicken leg	TAS [2]	Beef slaughterhouse environment	TAS [2]	Spoiled smoked salmon	TAS [2]
MIGS-6.3	Salinity	Tolerate 8–10% NaCl (w/v)	NAS [5]	Tolerate 8–10% NaCl (w/v)	NAS [5]	Tolerate 8–10% NaCl (w/v)	NAS [5]	Tolerate 8–10% NaCl (w/v)	NAS [5]
MIGS-22	Oxygen requirement	Facultative anaerobe	NAS [5]	Facultative anaerobe	NAS [5]	Facultative anaerobe	NAS [5]	Facultative anaerobe	NAS [5]
MIGS-15	Biotic relationship	free-living	NAS	free-living	NAS	free-living	NAS	free-living	NAS
MIGS-14	Pathogenicity	Non-pathogenic	NAS [5]	Non-pathogenic	NAS [5]	Non-pathogenic	NAS [5]	Non-pathogenic	NAS [5]
MIGS-4	Geographic location	Pays de Loire, France	NAS	Pays de Loire, France	NAS	Pays de Loire, France	NAS	Pays de Loire, France	NAS
MIGS-5	Sample collection	2009	TAS [40]	February, 2014	TAS [2]	April, 2015	TAS [2]	June, 2011	NAS [2]
MIGS-4.1	Latitude	47.2173° N	NAS	47.2173° N	NAS	47.059° N	NAS	47.2173° N	NAS
MIGS-4.2	Longitude	1.5534° W	NAS	1.5534° W	NAS	0.876° W	NAS	1.5534° W	NAS
MIGS-4.4	Altitude	2–52; 20 m	NAS	2–52; 20 m	NAS	63–184; 100 m	NAS	2–52; 20 m	NAS

^aEvidence codes - IDA: Inferred from Direct Assay; TAS: Traceable Author Statement (i.e., a direct report exists in the literature); NAS: Non-traceable Author Statement (i.e., not directly observed for the living, isolated sample, but based on a generally accepted property for the species, or anecdotal evidence). These evidence codes are from the Gene Ontology project [41]. When the evidence is IDA, the property was directly observed for a live isolate

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ISSN: 2524-6372

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