Table 3 Genome statistics
Attribute | Value | % of Total |
|---|---|---|
Genome size (bp) | 6,057,430 | 100.00 |
DNA coding (bp) | 5,053,197 | 83.42 |
DNA G + C (bp) | 2,107,907 | 34.80 |
DNA scaffolds | 38 | 100.00 |
Total genes | 6109 | 100.00 |
Protein coding genes | 5974 | 97.79 |
RNA genes | 135 | 2.21 |
Pseudo genes | 284 | 4.65 |
Genes in internal clusters | 2024 | 33.13 |
Genes with function prediction | 4463 | 73.06 |
Genes assigned to COGs | 3633 | 59.47 |
Genes with Pfam domains | 4883 | 79.93 |
Genes with signal peptides | 284 | 4.65 |
Genes with transmembrane helices | 1741 | 28.50 |
CRISPR repeats | 4 | 0.07 |