Table 4 Genome statistics
Attribute | ‘Ca. Chloroploca asiatica’ B7–9 | ‘Ca. Viridilinea mediisalina’ Kir15-3F | ||
|---|---|---|---|---|
Value | % of Total | Value | % of Total | |
Genome size (bp) | 5,817,919 | 100.00 | 5,588,620 | 100.00 |
DNA coding (bp) | 5,229,318 | 89.88 | 4,851,981 | 86.82 |
DNA G + C (bp) | 3,421,494 | 58.81 | 3,241,714 | 58.01 |
DNA scaffolds | 166 | 100.00 | 291 | 100.00 |
Total genes | 4878 | 100.00 | 4657 | 100.00 |
Protein coding genes | 4818 | 98.77 | 4595 | 98.67 |
RNA genes | 60 | 1.23 | 62 | 1.33 |
Pseudo genes | – | – | – | – |
Genes in internal clusters | 1117 | 22.90 | 1081 | 23.21 |
Genes with function prediction | 3518 | 72.12 | 3234 | 69.44 |
Genes assigned to COGs | 2634 | 54.00 | 2356 | 50.59 |
Genes with Pfam domains | 3550 | 72.78 | 3264 | 70.09 |
Genes with signal peptides | 171 | 3.51 | 139 | 2.98 |
Genes with transmembrane helices | 1371 | 28.11 | 1127 | 24.20 |
CRISPR repeats | 95 | 445 | ||