Table 6 Annotation parameters
From: Functional and taxonomic classification of a greenhouse water drain metagenome
Label | Metagenome Label | Comment |
|---|---|---|
Annotation system | Drain-IBt | The functional annotation using the reads was obtained using MG-RAST, Kraken, and HUMAnN2, while the functional protein annotation of the assembly was obtained from GO, InterPro, and KEGG using Blast2GO. |
Gene calling program | Frag Gene Scan | FragGeneScan was training with Illumina reads. |
Annotation algorithm | ||
Database(s) used | RefSeq, SEED, ChocoPhlAn, UniRef90, Interpro (data bases) Blast NR data base | |